BS20548.complete Sequence
1226 bp assembled on 2011-01-11
GenBank Submission: KX802210
> BS20548.complete
GAAGTTATCAGTCGACATGCTAATGAACATCCATCAACCAACTATTGATC
AGCAAACAATTCAACACTATCAGCAGCAATTGGCTGCTCAGCAACAACAA
CAAGTACAACAGCAACAGTTGCAACAACACCAGGTGGTCGTCCAGCAGAA
TCAGCAGCAGGCGCACCAGAACAGCTCCAATACCACAGCCGGCGTGGGCA
CCCAACAGCTGTTCACATACAAAATGGCCAGCAGTTTTCCGAATCCGGCC
ACGACGATGGCCCAAGTGGTGGCCACATCGAACGCAGCCGGCACCACGGG
CTATGATTATCGTCTAAATATGGCACAGGCAGCCGCAGCAGCAGCCGTAC
CCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGGGACAGGTCGATGCC
AATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAACAGCAACAGCAACA
ACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACAGATGCAACAGCAGC
AGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCATGAGCAGAGTCAAG
GCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTACGCATACTTTGTACA
AACTTGCAGAGAGGAGCACAAAAAGAAACATCCCGATGAGACGGTGATAT
TCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGAAGACAATGGTGGAC
AAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAGGACAAGCAGCGATA
TGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGGAGCGGTTGTGGGAC
GCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATGCTCCAAAACGTTCA
TTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGAAATAAGGTGAAGGC
ACTTAATCCCGAGTTCGGAGTGGGCGACATCGCCAAAGAGCTGGGACGAA
AGTGGTCCGATGTGGATCCCGAGGTCAAGCAGAAGTACGAGTCGATGGCC
GAGCGGGACAAGGCTCGATATGAACGCGAGATGACCGAGTACAAGACGAG
CGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGCGTCGATGCAGGCGC
AGGCACAGAAAGCCGCGTTACTTGCCGCCGCTGCCCAGCAGCAGCACCAG
CAGCTGGAAGAGCAGCACGACGACGACGACGGCGATGGAGATGATGACGA
GAACCAATAGAAGCTTTCTAGACCAT
BS20548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RF | 1194 | CG12223-PF | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| Dsp1-RE | 1182 | CG12223-PE | 22..1182 | 50..1210 | 5805 | 100 | Plus |
| Dsp1-RG | 1161 | CG12223-PG | 22..1161 | 71..1210 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RF | 2205 | CG12223-RF | 48..1241 | 17..1210 | 5970 | 100 | Plus |
| Dsp1-RE | 4240 | CG12223-RE | 263..1423 | 50..1210 | 5805 | 100 | Plus |
| Dsp1-RG | 2359 | CG12223-RG | 143..1282 | 71..1210 | 5700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336231..16336743 | 17..529 | 2565 | 100 | Plus |
| X | 23542271 | X | 16337625..16337807 | 1028..1210 | 915 | 100 | Plus |
| X | 23542271 | X | 16337381..16337556 | 853..1028 | 880 | 100 | Plus |
| X | 23542271 | X | 16337084..16337251 | 687..854 | 840 | 100 | Plus |
| X | 23542271 | X | 16336850..16337009 | 529..688 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2854 | 48..513 | 344 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2837 | 32..511 | 297 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6880 | 1094..1216 | 134 | 61.4 | Plus |
BS20548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:53 Download gff for
BS20548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RF | 44..1237 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:25 Download gff for
BS20548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RF | 48..1241 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:52 Download gff for
BS20548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RF | 48..1241 | 17..1210 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:52 Download gff for
BS20548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16337625..16337807 | 1028..1210 | 100 | | Plus |
| X | 16336231..16336743 | 17..529 | 100 | -> | Plus |
| X | 16336851..16337009 | 530..688 | 100 | -> | Plus |
| X | 16337086..16337249 | 689..852 | 100 | -> | Plus |
| X | 16337381..16337555 | 853..1027 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:25 Download gff for
BS20548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16230264..16230776 | 17..529 | 100 | -> | Plus |
| arm_X | 16230884..16231042 | 530..688 | 100 | -> | Plus |
| arm_X | 16231119..16231282 | 689..852 | 100 | -> | Plus |
| arm_X | 16231414..16231588 | 853..1027 | 100 | -> | Plus |
| arm_X | 16231658..16231840 | 1028..1210 | 100 | | Plus |
BS20548.pep Sequence
Translation from 16 to 1209
> BS20548.pep
MLMNIHQPTIDQQTIQHYQQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAH
QNSSNTTAGVGTQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRL
NMAQAAAAAAVPGSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQ
QHQQQQQMQQQQQQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREE
HKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQ
NYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEF
GVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAM
SAPSMQASMQAQAQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQ*
BS20548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-PF | 397 | CG12223-PF | 1..397 | 1..397 | 2067 | 100 | Plus |
| Dsp1-PE | 393 | CG12223-PE | 8..393 | 12..397 | 2008 | 100 | Plus |
| Dsp1-PG | 386 | CG12223-PG | 8..386 | 19..397 | 1969 | 100 | Plus |
| Dsp1-PD | 386 | CG12223-PD | 8..386 | 19..397 | 1969 | 100 | Plus |
| Dsp1-PC | 385 | CG12223-PC | 5..385 | 17..397 | 1968 | 99.5 | Plus |
| Dsp1-PE | 393 | CG12223-PE | 118..338 | 6..252 | 171 | 23.4 | Plus |
| Dsp1-PG | 386 | CG12223-PG | 111..331 | 6..252 | 171 | 23.4 | Plus |
| Dsp1-PD | 386 | CG12223-PD | 111..331 | 6..252 | 171 | 23.4 | Plus |
| Dsp1-PG | 386 | CG12223-PG | 6..241 | 125..342 | 166 | 23.2 | Plus |
| Dsp1-PD | 386 | CG12223-PD | 6..241 | 125..342 | 166 | 23.2 | Plus |
