BS20549.complete Sequence
1253 bp assembled on 2011-01-11
GenBank Submission: KX801678
> BS20549.complete
GAAGTTATCAGTCGACATGGATCTCATACAAGAGCCAAGATTGCCGGTGA
ACGAATGTCAGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCA
TCCAGTAGCACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGA
AGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAGGTGG
TTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAA
GAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGA
CAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGA
GCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCA
GAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGA
AACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAG
ATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCC
AACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGT
CGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCA
AAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAAC
GAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGC
GCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCG
AGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTG
GATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGC
GCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGT
ATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGTCAAT
CTCTCTGTAGAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCCACAG
TGCGGATCAATTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCA
CCGATGTGATGGAAACCTCCGGCTGGCAAAATATGATCACAACACATTCA
CATTTGATAGCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCCCACC
AATTGGACCACCAAGGAAACGCGTGAAAATGAGCTGAAAGCTTTCTAGAC
CAT
BS20549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RF | 1221 | CG12537-PF | 1..1221 | 17..1237 | 6090 | 99.9 | Plus |
| rdx-RA | 1221 | CG12537-PA | 1..1221 | 17..1237 | 6090 | 99.9 | Plus |
| rdx-RE | 2490 | CG12537-PE | 1290..2490 | 37..1237 | 5990 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RF | 3856 | CG12537-RF | 510..1733 | 16..1239 | 6105 | 99.9 | Plus |
| rdx-RA | 2962 | CG12537-RA | 510..1733 | 16..1239 | 6105 | 99.9 | Plus |
| rdx-RB | 2311 | CG12537-RB | 549..1752 | 36..1239 | 6005 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13969909..13970206 | 770..473 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 13969608..13969790 | 949..767 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 13970278..13970440 | 474..312 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 13970950..13971104 | 192..38 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 13969184..13969330 | 1239..1093 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 13969397..13969541 | 1092..948 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 13970505..13970634 | 315..186 | 635 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-26 15:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 1107..1154 | 132 | 75 | Plus |
BS20549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:54 Download gff for
BS20549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 509..1728 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:27 Download gff for
BS20549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 511..1730 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:56 Download gff for
BS20549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 511..1730 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:56 Download gff for
BS20549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13970508..13970629 | 191..312 | 99 | <- | Minus |
| 3R | 13970952..13971102 | 40..190 | 100 | <- | Minus |
| 3R | 13971268..13971290 | 17..39 | 100 | | Minus |
| 3R | 13969909..13970204 | 475..770 | 100 | <- | Minus |
| 3R | 13969397..13969539 | 950..1092 | 100 | <- | Minus |
| 3R | 13969608..13969786 | 771..949 | 100 | <- | Minus |
| 3R | 13970278..13970439 | 313..474 | 100 | <- | Minus |
| 3R | 13969187..13969330 | 1093..1236 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:27 Download gff for
BS20549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9794909..9795052 | 1093..1236 | 100 | <- | Minus |
| arm_3R | 9795119..9795261 | 950..1092 | 100 | <- | Minus |
| arm_3R | 9795330..9795508 | 771..949 | 100 | <- | Minus |
| arm_3R | 9795631..9795926 | 475..770 | 100 | <- | Minus |
| arm_3R | 9796000..9796161 | 313..474 | 100 | <- | Minus |
| arm_3R | 9796230..9796351 | 191..312 | 99 | <- | Minus |
| arm_3R | 9796674..9796824 | 40..190 | 100 | <- | Minus |
| arm_3R | 9796990..9797012 | 17..39 | 100 | | Minus |
BS20549.pep Sequence
Translation from 16 to 1236
> BS20549.pep
MDLIQEPRLPVNECQASQTARVTSNLHASSSTMAVSRVPSPPLPEVNTPV
AENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWC
LRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAME
SQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSV
NISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAIL
AARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEK
MADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLK
AQTIDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPR
KRVKMS*
BS20549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-PF | 406 | CG12537-PF | 1..406 | 1..406 | 2083 | 100 | Plus |
| rdx-PA | 406 | CG12537-PA | 1..406 | 1..406 | 2083 | 100 | Plus |
| rdx-PE | 829 | CG12537-PE | 429..829 | 6..406 | 2048 | 99.5 | Plus |
| rdx-PC | 403 | CG12537-PC | 5..403 | 8..406 | 2047 | 100 | Plus |
| rdx-PB | 374 | CG12537-PB | 1..374 | 33..406 | 1923 | 100 | Plus |
