BS20553.complete Sequence
2006 bp assembled on 2011-02-17
GenBank Submission: KX803611
> BS20553.complete
GAAGTTATCAGTCGACATGTTTACCCGATGTGCCAATTCGCTTGGCCTCT
ACCATAATAATATTAACAATAACAACAGCGCTTGCTGTGCCGCTTCCCCG
AAAAGAAGCTGCCTTCCGAGTGTGGAAAAGCCTGAAGATGCGTGCCTACA
GGTGGCGACGAATGTGACCGAGCAAAAGCACCATGTCACCAGGGAGACGC
GCGGCAAGAATTTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGG
CTGACTGGCCTCAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGA
GGCGTACCTGGTATCCCGGGGCATTCCGGCCTACGGGTTGGACGGCGACA
ACATTCGCACCGGACTGAACAAGAACCTGGGCTTCACGCCCGCCGATCGC
GAGGAAAACATTCGCCGCGTGGGCGAGGTGGCCAAGTTGTTTGCCGACAG
CGGAGTGGTGGCCATCTGCAGCTTCGTTTCGCCCTTCGCCGACGATCGTG
AGATGGCGCGCAAGATCCACAAGGATGCGGGTCTGAAGTTCTATGAGATA
TTCGTGGACACACCGCTGGATGTGTGCGAAACCCGGGACGTGAAGGGTCT
ATACAAGAAGGCGCGCGAGGGCGTAATCAAAGGATTCACGGGCATTACGC
AGGAGTACGAGCGACCCCAGATGCCGGAGCTGGTGGTCAACACGCACGGC
TACACGGTGCGCGAGTCCACTCAGAAGCTGGTGACGCTGCTCGAACAGGA
GGGCATTATTCCGCGCTCGCTGCGCGACGTAGACCTGCTGCCGGAGCTTT
ATCCCAGCGAATCCATTGCCACGGAGGCACTGCGTCACGAGGCCGAGTCG
CTGCAAGCCATCGAAATCAGCACCGTGGAGCTGCAGTGGGTGCAAGTACT
GGCCGAGGGATGGGCATATCCACTGCGCGGCTTCATGCGCGAGGATGAGT
ACCTGCAGACGCTGCACTTCAACACACTTCAGAGCGGCATGGACGGTTCC
TATCGCGAGAACCACTCGGTGCCCATTGTTTTGAGCGCCACGCAGGCGGA
CAAGGATCGTCTGGACGGCTGCTCCTCGCTGACTCTCAAATACCAAGGCA
AGGCGGTAGCCATTCTGCGGCGTCCCGAGTTCTACTTTCAGCGTAAGGAG
GAGCGGCTGGCCCGCCAGTTCGGCACCAGCAATCCCAATCACCCGTACAG
TAAGCAGGTCTACGAGTCCGGGGATTATTTGGTCGGTGGCGATCTGGCAG
TGATCGAACGTATCCGCTGGGAGGACGGACTGGATCAGTACAGGCTGACT
CCCAACGAGTTAAGGCGCCGCTTTAAGGAGCTGAATGCCGACGCCATCTT
CGCCTTTCAGTTGCGCAATCCCATCCACAACGGCCATGCCCTGCTCATGC
AAGACACTCGCCGCCAGCTGCTGGAGCGCGGCTTCAAGCAGCCAGTGCTG
CTGCTGCATCCTCTGGGTGGCTGGACCAAGGACGACGATGTGCCGCTGGA
TGTGCGCATGAAGCAGCACCAGGCCGTGCTCGACGCAGGTGTCTTGCGAC
GAGAGGACACAGTGCTGGCCATCTTCCCCTCGCCAATGATGTACGCCGGT
CCCACGGAGGTGCAGTGGCACGCAAAGGCGCGCATGAACGCCGGTGCGAA
CTTCTACATTGTAGGCCGTGATCCGGCTGGCATGCCGCATCCGGCCAAGG
AAACTTATCCGGATGGAAACCTATACGATGCCACCCATGGCGCGCGAGTG
CTTAAGATGGCCCAGGGACTAGACAGCATGGAGATCCTGCCCTTCCGTGT
TGCTGCCTATGACAAGAGCGCCAGTAGAATGGCCTTCTTCGAGCCCAAGA
GGAAGGATGAGTTTGAGTTCATCTCGGGAACCAAGATGCGCACCCTGGCC
AAAACGGGAGCCAGTCCGCCGGATGGCTTCATGGAACCGGAGGCTTGGCG
CATCCTGGCCACCTACTACCAGAACCTGCCGCAGTCGTAAAAGCTTTCTA
GACCAT
BS20553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RD | 1974 | CG8363-PD | 1..1974 | 17..1990 | 9855 | 99.9 | Plus |
| Papss-RG | 1890 | CG8363-PG | 41..1890 | 141..1990 | 9235 | 99.9 | Plus |
| Papss-RB | 1890 | CG8363-PB | 41..1890 | 141..1990 | 9235 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RD | 2457 | CG8363-RD | 170..2143 | 17..1990 | 9855 | 99.9 | Plus |
| Papss-RG | 2432 | CG8363-RG | 269..2118 | 141..1990 | 9235 | 99.9 | Plus |
| Papss-RB | 2394 | CG8363-RB | 231..2080 | 141..1990 | 9235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19860340 | 257..1783 | 7620 | 99.9 | Plus |
| 3L | 28110227 | 3L | 19860403..19860611 | 1782..1990 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 19847478..19847603 | 17..142 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 142..258 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:41:45 has no hits.
BS20553.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:44 Download gff for
BS20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 174..2139 | 23..1988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:57 Download gff for
BS20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 176..2141 | 23..1988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:26 Download gff for
BS20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 176..2141 | 23..1988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:26 Download gff for
BS20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19847484..19847603 | 23..142 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 143..257 | 100 | -> | Plus |
| 3L | 19858815..19860340 | 258..1783 | 99 | -> | Plus |
| 3L | 19860405..19860609 | 1784..1988 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:57 Download gff for
BS20553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19840584..19840703 | 23..142 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 143..257 | 100 | -> | Plus |
| arm_3L | 19851915..19853440 | 258..1783 | 99 | -> | Plus |
| arm_3L | 19853505..19853709 | 1784..1988 | 100 | | Plus |
BS20553.pep Sequence
Translation from 16 to 1989
> BS20553.pep
MFTRCANSLGLYHNNINNNNSACCAASPKRSCLPSVEKPEDACLQVATNV
TEQKHHVTRETRGKNLGLCRGFRGCTVWLTGLSGAGKTSIAFELEAYLVS
RGIPAYGLDGDNIRTGLNKNLGFTPADREENIRRVGEVAKLFADSGVVAI
CSFVSPFADDREMARKIHKDAGLKFYEIFVDTPLDVCETRDVKGLYKKAR
EGVIKGFTGITQEYERPQMPELVVNTHGYTVRESTQKLVTLLEQEGIIPR
SLRDVDLLPELYPSESIATEALRHEAESLQAIEISTVELQWVQVLAEGWA
YPLRGFMREDEYLQTLHFNTLQSGMDGSYRENHSVPIVLSATQADKDRLD
GCSSLTLKYQGKAVAILRRPEFYFQRKEERLARQFGTSNPNHPYSKQVYE
SGDYLVGGDLAVIERIRWEDGLDQYRLTPNELRRRFKELNADAIFAFQLR
NPIHNGHALLMQDTRRQLLERGFKQPVLLLHPLGGWTKDDDVPLDVRMKQ
HQAVLDAGVLRREDTVLAIFPSPMMYAGPTEVQWHAKARMNAGANFYIVG
RDPAGMPHPAKETYPDGNLYDATHGARVLKMAQGLDSMEILPFRVAAYDK
SASRMAFFEPKRKDEFEFISGTKMRTLAKTGASPPDGFMEPEAWRILATY
YQNLPQS*
BS20553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-PD | 657 | CG8363-PD | 1..657 | 1..657 | 3453 | 100 | Plus |
| Papss-PG | 629 | CG8363-PG | 7..629 | 35..657 | 3228 | 99 | Plus |
| Papss-PB | 629 | CG8363-PB | 7..629 | 35..657 | 3228 | 99 | Plus |
| Papss-PA | 629 | CG8363-PA | 7..629 | 35..657 | 3228 | 99 | Plus |
| Papss-PC | 629 | CG8363-PC | 7..629 | 35..657 | 3228 | 99 | Plus |
