BS20556.complete Sequence
1238 bp assembled on 2011-01-11
GenBank Submission: KX803318
> BS20556.complete
GAAGTTATCAGTCGACATGGAGCGGGAAATTTACAGTGCGGAATACTTCG
AGAGAGCTTTGGCGAGAGCTTATGGTTGTGAAATGCTTCGCGTTGAGAAC
TTTCACATCAAGGCGGTGAGCCAGAAGGGCGAGAACTTTTGCAGCGTCAT
CTACCGGGTGGCGTTGGTCTTTCGCAGGTCACCCGATGGCGCTCTCGAAT
CAGGAAAATATATTCTCAAGGATCTGCTGCCCGCCGCCGCTGCACTGGGC
ACCAACGAAAAGGATATGTTCGAGGTACTCCTGCCTGCCATGCAAGCCAT
TCTTGAAGAAGCTCCAAAGGAGATTGGCGAACACAAGCTGAGCGCAGATT
GCTTGCTAGTCGAGATATCTGCTGGAAAAGAGCTCTACATTCTGGAGGAT
CTGGGCGCCCTAGGATACGAATCCTTTGATCGTCGTCAAGGCTTAAATCT
GGAAGAAGCCAAAATTTGCGTAAGGAAACTGGCTCAGTTCCACGGTGCAT
CCAAGGTTTTGTACGAGAAGAAACCCGAATTGATTCAAAGGCTTTCGCCT
TCTCACTATGCCAATGGATTGAACGATCGCTTCGCCCAGGCTCTCGTCTT
GGAGGGCGCCGAATATGCCGCAGAAGCGTTTGCCGAAGAACTTCCGGAAA
TATCAAAGAAAATGAAGGCTCAAATACCGAAAGCATATACGAAAAGAATG
CGAGATGTCGTTGATCCAAACAAGTCATCATTGAATGCAGTTATTCATGG
TGATCCCTGGTTAAATAACATTATGTTTGATTTCGTTAATAAGAAGGCAA
CACTTGTGGATTTCCAAAACTGTTACTGGGGTAGCCCGGCCATAGATCTC
TACTTTCTATTTTACACCAGCCTCAAGCCTGAATTATTGCTAAATAATCA
AGATGAGCTTCTGAATTACTATTTCGACAATCTTCTGGAAACCCTGCGGC
ATTGCGGCTATAAAGACACACTGCCCACTTTTGGCCAGTTAAAGGATGAG
ATGAAACGGTGTTTGTTTTATGGATATTACACTGTAGTCTGTGAACTTCC
CATATGTTGTGCTTCCCCTGAGGCAAGTGTTGATTTCGGGGTTCACACCT
TCGTAGATACGGATGCTATGTTAAAAAAGCGACACCAATTATTCGCCAGC
GAACGAGTGCGTCAAACCATAAAGGCCACTCTGCTTATGTTCGATCGTGA
GGGTATATTAGAGACGCCCTAAAAGCTTTCTAGACCAT
BS20556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32195-RC | 1206 | CG32195-PC | 1..1206 | 17..1222 | 6030 | 100 | Plus |
| CG32195-RB | 1206 | CG32195-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
| CG32195-RA | 1206 | CG32195-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32195-RC | 1563 | CG32195-RC | 143..1349 | 17..1223 | 6035 | 100 | Plus |
| CG32195-RB | 1701 | CG32195-RB | 281..1487 | 17..1223 | 6035 | 100 | Plus |
| CG32195-RA | 4876 | CG32195-RA | 281..1487 | 17..1223 | 6035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18114823..18115282 | 349..808 | 2300 | 100 | Plus |
| 3L | 28110227 | 3L | 18115344..18115761 | 806..1223 | 2090 | 100 | Plus |
| 3L | 28110227 | 3L | 18114426..18114757 | 17..348 | 1660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:58:30 has no hits.
BS20556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:59 Download gff for
BS20556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 279..1482 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:35 Download gff for
BS20556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 281..1484 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:15 Download gff for
BS20556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 281..1484 | 17..1220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:15 Download gff for
BS20556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18114426..18114757 | 17..348 | 100 | -> | Plus |
| 3L | 18114823..18115279 | 349..805 | 100 | -> | Plus |
| 3L | 18115344..18115758 | 806..1220 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:35 Download gff for
BS20556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18107526..18107857 | 17..348 | 100 | -> | Plus |
| arm_3L | 18107923..18108379 | 349..805 | 100 | -> | Plus |
| arm_3L | 18108444..18108858 | 806..1220 | 100 | | Plus |
BS20556.pep Sequence
Translation from 16 to 1221
> BS20556.pep
MEREIYSAEYFERALARAYGCEMLRVENFHIKAVSQKGENFCSVIYRVAL
VFRRSPDGALESGKYILKDLLPAAAALGTNEKDMFEVLLPAMQAILEEAP
KEIGEHKLSADCLLVEISAGKELYILEDLGALGYESFDRRQGLNLEEAKI
CVRKLAQFHGASKVLYEKKPELIQRLSPSHYANGLNDRFAQALVLEGAEY
AAEAFAEELPEISKKMKAQIPKAYTKRMRDVVDPNKSSLNAVIHGDPWLN
NIMFDFVNKKATLVDFQNCYWGSPAIDLYFLFYTSLKPELLLNNQDELLN
YYFDNLLETLRHCGYKDTLPTFGQLKDEMKRCLFYGYYTVVCELPICCAS
PEASVDFGVHTFVDTDAMLKKRHQLFASERVRQTIKATLLMFDREGILET
P*
BS20556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32195-PC | 401 | CG32195-PC | 1..401 | 1..401 | 2084 | 100 | Plus |
| CG32195-PB | 401 | CG32195-PB | 1..401 | 1..401 | 2084 | 100 | Plus |
| CG32195-PA | 401 | CG32195-PA | 1..401 | 1..401 | 2084 | 100 | Plus |
| CG10513-PB | 422 | CG10513-PB | 23..419 | 10..399 | 454 | 30.1 | Plus |
| CG11892-PA | 439 | CG11892-PA | 35..436 | 4..399 | 404 | 27.5 | Plus |
