BS20557.complete Sequence
2672 bp assembled on 2012-04-25
GenBank Submission: KX806041
> BS20557.complete
GAAGTTATCAGTCGACATGGTCGTGTCCACTTTGCACATAACGCTGGAGA
ACAACGGCAATGTTGCTGCGGGGCAGCCTGCTGCCGTTGCTGCTGCCAGT
GTCGTTGGGGCAGCAACATCGCCGACCAAGTTTGCCGTGCTGTCGGCGCA
GCAGCTGCAACTGCAACTGCAGCAGCAGCAGCAGCAGCAGAACGAAAAGG
AGAACCATATGAACAATAATAACAATAACAGCGACTATTGTGATATGAAT
GGCAATGGAGTTGGAATGGGAAACGGTGGTAGTGGTGGACCGGGATCTCT
GACCCCCCAATCCCCCGACCAATATGTCGGCTCACCTGTATCATCCGCTG
CCACGCCCCAGCGCACCGCCTCCGCCCTGCGTCGCGGCATTCAAATTCAA
CGATCCTCGACGCGTTTGCGACAACAACAGGAGCAACTGCGCCGACGACG
CGAGGAGGAGGAGCGCATAGCGCAGCAAAATGAATTCCTGCGGAACAGTC
TTCGTGGCTCCAGGAAGCTGAAGGCGCTTCAGGATACGGCTACGCCCGGT
AAAGCGGTTGCCCAGCAGCAGCAGCAGGCAACGCTGGCCACCCAGGTGGT
TGGCGTGGAGAATGAGGCATATCTGCCCGACGAAGACCAGCCGCAGGCGG
AACAGATCGATGGCTATGGCGAACTGATAGCGGCCCTTACCCGCCTGCAA
AACCAGCTGAGCAAGAGCGGACTGAGCACGCTGGCGGGTCGCGTTTCGGC
CGCCCACAGTGTCCTGGCCAGCGCCAGTGTGGCCCATGTCCTGGCCGCTC
GCACCGCAGTACTGCAGCGACGACGTTCCCGCGTCTCTGGTCCACTGCAT
CACAGTTCCCTCGGATTGCAGAAGGACATTGTGGAGCTGCTAACGCAATC
GAATACGGCGGCGGCCATCGAGCTGGGCAACCTGCTGACCAGCCATGAAA
TGGAGGGTCTGCTACTGGCCCACGATCGCATTGCCAATCACACGGATGGC
ACGCCCTCGCCAACGCCCACGCCCACTCCGGCAATTGGAGCGGCGACGGG
ATCGACACTCAGCAGTCCGGTGGCTGGACCCAAGAGAAATCTAGGTATGG
TGGTGCCACCGCCCGTGGTACCACCGCCACTGGCGCAACGCGGAGCAATG
CCACTGCCTCGCGGGGAGTCGCCACCGCCGGTTCCCATGCCACCACTGGC
TACAATGCCCATGTCCATGCCCGTTAATCTGCCGATGAGTGCGTGCTTTG
GCACGCTAAACGATCAGAACGACAACATTCGTATCATCCAGATCGAGAAG
TCAACGGAGCCGCTGGGCGCCACAGTGCGCAACGAGGGTGAGGCGGTGGT
CATCGGTAGGATTGTGCGTGGTGGAGCGGCGGAGAAGTCGGGACTGTTGC
ACGAAGGTGATGAGATACTGGAGGTCAACGGTCAGGAGTTGCGTGGCAAG
ACGGTGAACGAAGTGTGCGCCCTGTTGGGCGCCATGCAAGGCACCCTGAC
CTTCCTGATCGTCCCAGCGGGTAGTCCACCGTCCGTCGGCGTGATGGGCG
GAACAACGGGCAGTCAACTGGCCGGGTTGGGTGGAGCACATCGTGACACC
GCCGTGTTGCACGTACGGGCGCATTTCGACTACGATCCAGAGGACGATCT
GTATATACCCTGCCGGGAGCTGGGCATCAGCTTCCAGAAGGGCGATGTAC
TGCACGTGATTAGCCGCGAGGATCCCAACTGGTGGCAGGCGTATCGCGAG
GGCGAGGAGGACCAGACGCTGGCCGGTCTTATTCCTAGTCAGTCGTTCCA
GCATCAGCGCGAGACCATGAAGCTGGCCATTGCGGAGGAGGCGGGTCTGG
CGCGATCCCGCGGTAAGGACGGATCGGGCAGCAAAGGAGCCACGCTCCTG
TGTGCGCGCAAGGGTCGCAAAAAGAAGAAGAAGGCCAGCTCCGAGGCGGG
ATATCCTTTATACGCCACCACGGCGCCGGATGAAACGGATCCGGAGGAGA
TACTCACCTACGAGGAGGTGGCCTTGTACTATCCCCGCGCTACCCACAAG
CGGCCCATCGTCCTCATCGGCCCGCCCAACATTGGAAGACATGAGTTGCG
CCAACGTCTGATGGCCGACTCGGAGCGTTTCTCCGCCGCAGTGCCACACA
CATCACGAGCCCGCAGGGAGGGCGAAGTGCCCGGAGTGGACTACCACTTC
ATCACGCGACAGGCCTTTGAGGCGGATATTTTGGCGCGCCGCTTTGTGGA
GCACGGTGAATATGAGAAGGCCTACTACGGCACATCACTGGAGGCCATAC
GCACGGTGGTGGCCAGCGGCAAGATCTGTGTGCTCAACCTGCATCCGCAG
AGCCTTAAGCTGCTGCGCGCCTCTGACCTCAAGCCGTACGTGGTGCTGGT
GGCGCCGCCCAGCTTGGACAAGCTGCGCCAAAAGAAGCTGCGCAACGGCG
AACCCTTCAAGGAGGAAGAGCTCAAAGACATCATTGCCACGGCCAGGGAT
ATGGAGGCCCGTTGGGGTCACCTATTCGACATGATCATAATCAACAACGA
CACGGAGCGCGCCTACCACCAACTGCTGGCCGAGATCAACTCGCTGGAAC
GCGAGCCCCAATGGGTGCCCGCCCAGTGGGTGCACAACAATCGCGACGAG
TCATAAAAGCTTTCTAGACCAT
BS20557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RK | 2640 | CG32717-PK | 1..2640 | 17..2656 | 13200 | 100 | Plus |
| sdt-RD | 2640 | CG32717-PD | 1..2640 | 17..2656 | 13200 | 100 | Plus |
| sdt-RN | 3879 | CG32717-PN | 1651..3879 | 428..2656 | 11145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RK | 3790 | CG32717-RK | 170..2809 | 17..2656 | 13200 | 100 | Plus |
| sdt-RD | 3838 | CG32717-RD | 218..2857 | 17..2656 | 13200 | 100 | Plus |
| sdt-RN | 5650 | CG32717-RN | 2441..4669 | 428..2656 | 11145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8235881..8237169 | 662..1950 | 6445 | 100 | Plus |
| X | 23542271 | X | 8232493..8232907 | 17..431 | 2075 | 100 | Plus |
| X | 23542271 | X | 8235585..8235821 | 427..663 | 1185 | 100 | Plus |
| X | 23542271 | X | 8237231..8237428 | 1950..2147 | 990 | 100 | Plus |
| X | 23542271 | X | 8238250..8238446 | 2460..2656 | 985 | 100 | Plus |
| X | 23542271 | X | 8238006..8238189 | 2279..2462 | 920 | 100 | Plus |
| X | 23542271 | X | 8237810..8237942 | 2148..2280 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:05:46 has no hits.
BS20557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:18 Download gff for
BS20557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RD | 218..2855 | 17..2654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:16 Download gff for
BS20557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RD | 218..2855 | 17..2654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:01 Download gff for
BS20557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RD | 218..2855 | 17..2654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:01 Download gff for
BS20557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8235592..8235820 | 434..662 | 100 | -> | Plus |
| X | 8232493..8232910 | 17..433 | 99 | -> | Plus |
| X | 8235882..8237169 | 663..1950 | 100 | -> | Plus |
| X | 8237232..8237428 | 1951..2147 | 100 | -> | Plus |
| X | 8237810..8237941 | 2148..2279 | 100 | -> | Plus |
| X | 8238007..8238188 | 2280..2461 | 100 | -> | Plus |
| X | 8238252..8238444 | 2462..2654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:16 Download gff for
BS20557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8132285..8132477 | 2462..2654 | 100 | | Plus |
| arm_X | 8131265..8131461 | 1951..2147 | 100 | -> | Plus |
| arm_X | 8131843..8131974 | 2148..2279 | 100 | -> | Plus |
| arm_X | 8132040..8132221 | 2280..2461 | 100 | -> | Plus |
| arm_X | 8126526..8126943 | 17..433 | 99 | -> | Plus |
| arm_X | 8129625..8129853 | 434..662 | 100 | -> | Plus |
| arm_X | 8129915..8131202 | 663..1950 | 100 | -> | Plus |
BS20557.pep Sequence
Translation from 16 to 2655
> BS20557.pep
MVVSTLHITLENNGNVAAGQPAAVAAASVVGAATSPTKFAVLSAQQLQLQ
LQQQQQQQNEKENHMNNNNNNSDYCDMNGNGVGMGNGGSGGPGSLTPQSP
DQYVGSPVSSAATPQRTASALRRGIQIQRSSTRLRQQQEQLRRRREEEER
IAQQNEFLRNSLRGSRKLKALQDTATPGKAVAQQQQQATLATQVVGVENE
AYLPDEDQPQAEQIDGYGELIAALTRLQNQLSKSGLSTLAGRVSAAHSVL
ASASVAHVLAARTAVLQRRRSRVSGPLHHSSLGLQKDIVELLTQSNTAAA
IELGNLLTSHEMEGLLLAHDRIANHTDGTPSPTPTPTPAIGAATGSTLSS
PVAGPKRNLGMVVPPPVVPPPLAQRGAMPLPRGESPPPVPMPPLATMPMS
MPVNLPMSACFGTLNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIV
RGGAAEKSGLLHEGDEILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVP
AGSPPSVGVMGGTTGSQLAGLGGAHRDTAVLHVRAHFDYDPEDDLYIPCR
ELGISFQKGDVLHVISREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRET
MKLAIAEEAGLARSRGKDGSGSKGATLLCARKGRKKKKKASSEAGYPLYA
TTAPDETDPEEILTYEEVALYYPRATHKRPIVLIGPPNIGRHELRQRLMA
DSERFSAAVPHTSRARREGEVPGVDYHFITRQAFEADILARRFVEHGEYE
KAYYGTSLEAIRTVVASGKICVLNLHPQSLKLLRASDLKPYVVLVAPPSL
DKLRQKKLRNGEPFKEEELKDIIATARDMEARWGHLFDMIIINNDTERAY
HQLLAEINSLEREPQWVPAQWVHNNRDES*
BS20557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-PK | 879 | CG32717-PK | 1..879 | 1..879 | 4501 | 100 | Plus |
| sdt-PD | 879 | CG32717-PD | 1..879 | 1..879 | 4501 | 100 | Plus |
| sdt-PN | 1292 | CG32717-PN | 421..1292 | 4..879 | 3830 | 87.4 | Plus |
| sdt-PI | 1269 | CG32717-PI | 398..1269 | 4..879 | 3830 | 87.4 | Plus |
| sdt-PE | 1367 | CG32717-PE | 496..1367 | 4..879 | 3830 | 87.4 | Plus |
