BS20559.complete Sequence
1148 bp assembled on 2011-02-17
GenBank Submission: KX801813
> BS20559.complete
GAAGTTATCAGTCGACATGAATCACCTTGGCGTTTTTGAAACCCGTTTTC
GCCCTCGAACTAGGCACAAATCGCAGAGGGCACAATTGATTCCAGAACAA
ATCACAATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCCTGCTGGCGGT
GGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGT
TCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGAGGAGCGTTTC
CGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCAAGCACAACCA
GCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTCAATAAGTACG
CCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGGCTTCAACTAC
ACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCAAGGGAGTCAC
CTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTGGACTGGCGCA
CCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTGCGGCAGCTGC
TGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATTTCCGCAAGTC
CGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGATTGCTCCACCA
AGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAATGCCTTCCGC
TATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCTATCCCTACGA
GGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTCGGAGCCACCG
ATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAAGATGGCCGAG
GCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATGCCTCCCACGA
GTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCGCAGTGTGATG
CCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGGCACCGACGAG
TCCGGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCACCACCTGGGG
CGACAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAACCAGTGCGGCA
TCGCTAGCGCCTCCAGCTATCCCCTGGTCTAGAAGCTTTCTAGACCAT
BS20559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1116 | CG6692-PC | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| Cp1-RA | 1026 | CG6692-PA | 1..1026 | 107..1132 | 5130 | 100 | Plus |
| Cp1-RE | 1017 | CG6692-PE | 90..1017 | 205..1132 | 4640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1369 | CG6692-RC | 14..1130 | 17..1133 | 5585 | 100 | Plus |
| Cp1-RA | 1486 | CG6692-RA | 201..1247 | 87..1133 | 5235 | 100 | Plus |
| Cp1-RD | 1481 | CG6692-RD | 313..1242 | 204..1133 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13967029..13967742 | 420..1133 | 3570 | 100 | Plus |
| 2R | 25286936 | 2R | 13966753..13966969 | 204..420 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 13962219..13962336 | 88..205 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 13961194..13961265 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:48:48 has no hits.
BS20559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:45 Download gff for
BS20559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 14..1129 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:48 Download gff for
BS20559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 14..1129 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:28 Download gff for
BS20559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 14..1129 | 17..1132 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:28 Download gff for
BS20559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13961194..13961265 | 17..88 | 100 | -> | Plus |
| 2R | 13962220..13962336 | 89..205 | 100 | -> | Plus |
| 2R | 13966755..13966969 | 206..420 | 100 | -> | Plus |
| 2R | 13967030..13967741 | 421..1132 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:48 Download gff for
BS20559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9848699..9848770 | 17..88 | 100 | -> | Plus |
| arm_2R | 9849725..9849841 | 89..205 | 100 | -> | Plus |
| arm_2R | 9854260..9854474 | 206..420 | 100 | -> | Plus |
| arm_2R | 9854535..9855246 | 421..1132 | 100 | | Plus |
BS20559.pep Sequence
Translation from 16 to 1131
> BS20559.pep
MNHLGVFETRFRPRTRHKSQRAQLIPEQITMRTAVLLPLLALLAVAQAVS
FADVVMEEWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEG
KVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPA
HVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVS
LSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAIDDS
CHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFY
SEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFI
KMLRNKENQCGIASASSYPLV*
BS20559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-PC | 371 | CG6692-PC | 1..371 | 1..371 | 1979 | 100 | Plus |
| Cp1-PA | 341 | CG6692-PA | 1..341 | 31..371 | 1822 | 100 | Plus |
| Cp1-PE | 338 | CG6692-PE | 31..338 | 64..371 | 1661 | 100 | Plus |
| Cp1-PD | 249 | CG6692-PD | 1..249 | 123..371 | 1349 | 100 | Plus |
| CG4847-PE | 390 | CG4847-PE | 79..390 | 56..371 | 621 | 41.7 | Plus |
