BS20560.complete Sequence
1697 bp assembled on 2011-02-17
GenBank Submission: KX803573
> BS20560.complete
GAAGTTATCAGTCGACATGAAACAGCGAAATCTTAGGAATAATAAAGCAC
TCAAACGCCTCCAGCAGCCAGATAATAAAAATCTAAATTGTTGCTTGAGT
AAACGTTGCAACTATGAAAATATCTGGCAGCATTTCAATAGCAATGCCAC
CCTTGAGGAAATTCGACATGCGGCCGCGCGTATTTGCCGAGACTATCTAA
CTGGGCCCTGGAAAGTGGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATA
AGTGGCGGGCTGTCAAATTTCTTGTATTACGTAAGCCTTCCCGATTTAAA
TGACTACGATGAGCTGGACGAACAGAAACAGCAGCAGGAAGACATCATAG
GGGCCACCGCAACTGTGACCAATAGAAGCGGAGTTTTCATACACGACGAT
GAGTCGGCTGCCAAGGCGGTGGGCGTAACATTGATGGCGAGGGAATTAAT
AAATAACGATGACGTCGCCGACGCAGCTCCTGGCGCCACACAAGCACACA
AACGTCAGCGATGCGATAGTAATAGTCGCGAATGCAGTTCTTCGAAACGA
TTGCACGCCCCCAAGCAGCAACCCCGTGAGGTCCTTCTGCGAATATATGG
TCAGACCCATGGTGATCACGCCCTGGAGAGCATGATTACCGAGTCCGTGG
TTTTCGCCCTTCTCAGTGAACGGAACTATGGGCCCAAACTGCACGGAATC
TTTCCGGGCGGACGTATTGAACAATATATTCCGGCACGCGCTTTGACCAC
AGCAGAATTGGGAGAGCAACGAATATTAAAGAGAGTGGCTGAGAAAATGG
GTGAGATCCACAGTCTTAATATACCCATGTCTAAGGAGCCCGATTGGATT
TGGAATTGTATGCAGCGTTGGGTTTCCGGTTTAGAGAGCATTGTTAACGG
CAGTGTCCAAACGAATCAAAAATCTTCGGTACTGAAGAAGCAAATGGAAT
TGATGCGGACCTTTGACTACGTTCAAGAGATGGCCTGGATTAGGTCGATT
ATCGATGAAGGAGATTATCCAGTTGTGTTCTGTCATAATGATCTGCAAGA
AGGTAATATTCTGATGCGACAACCGTCAGCTGGTCAAAACGAACGGACCC
CCCGGGAGTCAATCAGTAGCCTGAGATCCAACTTCGACGAAACTTTGGGT
GATAGCCTTGATGGAAATAGCAATATATCGGATACGGAGACACACAAATC
ACGTAGCGTGTCGCCTTCACCATGCCCGGAGTTGGACACTACGAATGACT
CAGCCCTGGATTCCAGCTTCATGGCCGATAATGAGCCGGATCTTATTATC
ATCGACTTTGAGTATTGTGCCTACAACTACCGTGGCTATGATCTTGCCAA
TCATTTCATTGAGTGGACTTTCGACTACACTAACCCACAGTTCCCTTACT
TCTACCACAACTCCAGCAACTGCGCAACTGTTCAGCAACGGCGCGACTTC
ATTGTAAACTATTTAAAGAAATTTCACGATGACGAGAACTATAATATCAC
TGGCCAGGAGTTGATGAAGGTAGACGCTGAGATTCAGTTCTTTACAATGC
TGTCTCATCTGTTCTGGAGCCTTTGGTCCGTAATTAATGTCACATCGGCG
ATTGAGTTTGGTTATTGGGAATATGGTATTGCTCGAATTTTGGAATATCA
AAAGCTAAAGGCAGCTTATCAAGCTAATTAAAAGCTTTCTAGACCAT
BS20560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RF | 1665 | CG2201-PF | 1..1665 | 17..1681 | 8310 | 99.9 | Plus |
| CG2201-RB | 1665 | CG2201-PB | 1..1665 | 17..1681 | 8310 | 99.9 | Plus |
| CG2201-RG | 1557 | CG2201-PG | 22..1557 | 146..1681 | 7665 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RF | 2561 | CG2201-RF | 150..1815 | 16..1681 | 8315 | 99.9 | Plus |
| CG2201-RB | 2027 | CG2201-RB | 150..1815 | 16..1681 | 8315 | 99.9 | Plus |
| CG2201-RC | 1814 | CG2201-RC | 66..1602 | 145..1681 | 7670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21615102..21615526 | 1619..1195 | 2110 | 99.8 | Minus |
| 2L | 23513712 | 2L | 21616182..21616574 | 1125..733 | 1965 | 100 | Minus |
| 2L | 23513712 | 2L | 21617492..21617823 | 582..251 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 21617279..21617434 | 734..579 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 21618495..21618625 | 146..16 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 21618004..21618110 | 252..146 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 21615608..21615678 | 1194..1124 | 355 | 100 | Minus |
| 2L | 23513712 | 2L | 21614978..21615041 | 1681..1618 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:51:17 has no hits.
BS20560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:46 Download gff for
BS20560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 149..1811 | 17..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:18 Download gff for
BS20560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 151..1813 | 17..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:32 Download gff for
BS20560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 151..1813 | 17..1679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:32 Download gff for
BS20560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21614980..21615040 | 1619..1679 | 100 | <- | Minus |
| 2L | 21615103..21615526 | 1195..1618 | 99 | <- | Minus |
| 2L | 21615608..21615676 | 1126..1194 | 100 | <- | Minus |
| 2L | 21616182..21616573 | 734..1125 | 100 | <- | Minus |
| 2L | 21617280..21617432 | 581..733 | 100 | <- | Minus |
| 2L | 21617494..21617821 | 253..580 | 100 | <- | Minus |
| 2L | 21618004..21618110 | 146..252 | 100 | <- | Minus |
| 2L | 21618496..21618624 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:18 Download gff for
BS20560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21614980..21615040 | 1619..1679 | 100 | <- | Minus |
| arm_2L | 21615103..21615526 | 1195..1618 | 99 | <- | Minus |
| arm_2L | 21615608..21615676 | 1126..1194 | 100 | <- | Minus |
| arm_2L | 21616182..21616573 | 734..1125 | 100 | <- | Minus |
| arm_2L | 21617280..21617432 | 581..733 | 100 | <- | Minus |
| arm_2L | 21617494..21617821 | 253..580 | 100 | <- | Minus |
| arm_2L | 21618004..21618110 | 146..252 | 100 | <- | Minus |
| arm_2L | 21618496..21618624 | 17..145 | 100 | | Minus |
BS20560.pep Sequence
Translation from 16 to 1680
> BS20560.pep
MKQRNLRNNKALKRLQQPDNKNLNCCLSKRCNYENIWQHFNSNATLEEIR
HAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFLYYVSLPDLNDYDEL
DEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVGVTLMARELINNDDV
ADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQPREVLLRIYGQTHGD
HALESMITESVVFALLSERNYGPKLHGIFPGGRIEQYIPARALTTAELGE
QRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWVSGLESIVNGSVQTN
QKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPVVFCHNDLQEGNILM
RQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSNISDTETHKSRSVSP
SPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAYNYRGYDLANHFIEW
TFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKFHDDENYNITGQELM
KVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEYGIARILEYQKLKAA
YQAN*
BS20560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-PF | 554 | CG2201-PF | 1..554 | 1..554 | 2939 | 100 | Plus |
| CG2201-PB | 554 | CG2201-PB | 1..554 | 1..554 | 2939 | 100 | Plus |
| CG2201-PG | 518 | CG2201-PG | 8..518 | 44..554 | 2696 | 100 | Plus |
| CG2201-PA | 518 | CG2201-PA | 8..518 | 44..554 | 2696 | 100 | Plus |
| CG2201-PC | 415 | CG2201-PC | 1..415 | 140..554 | 2206 | 100 | Plus |
