BS20561.complete Sequence
1349 bp assembled on 2011-01-11
GenBank Submission: KX805279
> BS20561.complete
GAAGTTATCAGTCGACATGCTGAACACCTTCAGTTCGGTGAGGCAGTACC
TCAAGTTCGATCTCACGCGTGTGGTCATCGACAATATAGTGTTCAAGCTG
CACTATCGATGGACCTTCGTAATACTCCTAGTGGCCACCCTCCTGATCAC
GTCGCGCCAGTACATCGGGGAGCACATCCAGTGCCTATCCGACGGTGTTG
TGTCTCCGGTCATCAACACCTTCTGCTTCTTCACGCCCACCTTCACAGTG
GTACGTGACCAGAACCAAACTGCCTACAGGCCGGGAAGTGAGCCACCTGG
TATAGGGGCATTCGATCCCGAAAAGGACACGATCAAGCGGCATGCATACT
ACCAGTGGGTGCCCTTTGTCCTGTTCTTCCAGGCTCTCTGCTTCTACATT
CCCCATGCCCTGTGGAAGAGTTGGGAGGGCGGCCGGATCAAGGCCCTGGT
CTTTGGTCTTCGAATGGTGGGTCTAACGAGGTACCTGAAGAACGATAGTC
TGCGTATCGGCAAGCTGAACATTCCCTCGATGGCGGAGGCGGAGGAGCGG
GTCAAGGACATTCGTCGCACAATGATCGACCGGATGCGGCTGAATCAATC
GTGGGGTGCCCACTTGGTCTTCGCGGAGGTGCTCAATCTGATTAATCTTC
TGCTGCAGATCACATGGACCAACCGTTTTTTGGGCGGTCAATTCCTCACA
CTGGGACCACATGCCCTGAAAAATCGGTGGTCCGACGAGCTGAGCGTTTT
GGATCTAGTATTCCCGAAGATTACCAAGTGCAAGTTCCACAAATTTGGTG
ACTCTGGCTCCATTCAAATGCACGATGCCCTTTGCGTGATGGCGCTGAAC
ATCATGAACGAGAAGATCTACATTATTCTGTGGTTCTGGTACGCCTTCCT
TTTGATTGTTACTGTTCTGGGACTGCTTTGGAGAATTTTAACCCTGTGCT
TCTACAGAAATGTCACATTTACCCGCTGGTCTCTCTATTGGGCCAAGCCT
GGCCAACTGGACGAAAACGAATTATTGGCGGTAATTGATAAGTGTAACTT
TTCCAACTGGATGTTCCTTTTCTTCCTGCGCTCCAACCTTTCGGAGTTCC
TATTCAAGAAGGTTATCTATCATTTGGCTAGTGAGTTCCCCAATCCCGAT
CACGATAACGATGTCAATGCCTATCGAGAGGCACCGCCCACGCCCGCTAA
GAACCGTTATCCGGAGCTCAGTGGTCTGGATACGATTGATTCACCACTCT
TGCACCTTCGACGCAATGGCTCGCCCTCTGCCGGCGGAGCCCAAGGGCCA
TCGACTTCGGATATGGCAAAGTTACCTGTATAAAAGCTTTCTAGACCAT
BS20561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx7-RA | 1317 | CG2977-PA | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
| Inx7-RB | 1086 | CG2977-PB | 2..1086 | 249..1333 | 5410 | 99.9 | Plus |
| Inx3-RC | 1188 | CG1448-PC | 724..841 | 773..890 | 185 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx7-RA | 1634 | CG2977-RA | 200..1516 | 17..1333 | 6570 | 99.9 | Plus |
| Inx7-RB | 1690 | CG2977-RB | 488..1572 | 249..1333 | 5410 | 99.9 | Plus |
| Inx3-RC | 1652 | CG1448-RC | 864..981 | 773..890 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6992173..6992883 | 960..250 | 3540 | 99.9 | Minus |
| X | 23542271 | X | 6991730..6992102 | 1333..961 | 1865 | 100 | Minus |
| X | 23542271 | X | 6993177..6993413 | 253..17 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:59:28 has no hits.
BS20561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:14 Download gff for
BS20561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx7-RA | 195..1509 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:00 Download gff for
BS20561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx7-RA | 200..1514 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:38 Download gff for
BS20561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx7-RA | 200..1514 | 17..1331 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:38 Download gff for
BS20561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6991732..6992102 | 961..1331 | 100 | <- | Minus |
| X | 6992173..6992882 | 251..960 | 99 | <- | Minus |
| X | 6993180..6993413 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:00 Download gff for
BS20561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6885765..6886135 | 961..1331 | 100 | <- | Minus |
| arm_X | 6886206..6886915 | 251..960 | 99 | <- | Minus |
| arm_X | 6887213..6887446 | 17..250 | 100 | | Minus |
BS20561.pep Sequence
Translation from 16 to 1332
> BS20561.pep
MLNTFSSVRQYLKFDLTRVVIDNIVFKLHYRWTFVILLVATLLITSRQYI
GEHIQCLSDGVVSPVINTFCFFTPTFTVVRDQNQTAYRPGSEPPGIGAFD
PEKDTIKRHAYYQWVPFVLFFQALCFYIPHALWKSWEGGRIKALVFGLRM
VGLTRYLKNDSLRIGKLNIPSMAEAEERVKDIRRTMIDRMRLNQSWGAHL
VFAEVLNLINLLLQITWTNRFLGGQFLTLGPHALKNRWSDELSVLDLVFP
KITKCKFHKFGDSGSIQMHDALCVMALNIMNEKIYIILWFWYAFLLIVTV
LGLLWRILTLCFYRNVTFTRWSLYWAKPGQLDENELLAVIDKCNFSNWMF
LFFLRSNLSEFLFKKVIYHLASEFPNPDHDNDVNAYREAPPTPAKNRYPE
LSGLDTIDSPLLHLRRNGSPSAGGAQGPSTSDMAKLPV*
BS20561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx7-PA | 438 | CG2977-PA | 1..438 | 1..438 | 2339 | 100 | Plus |
| Inx7-PB | 361 | CG2977-PB | 1..361 | 78..438 | 1936 | 99.7 | Plus |
| Inx2-PD | 367 | CG4590-PD | 1..358 | 1..379 | 675 | 38.5 | Plus |
| Inx2-PC | 367 | CG4590-PC | 1..358 | 1..379 | 675 | 38.5 | Plus |
| Inx2-PB | 367 | CG4590-PB | 1..358 | 1..379 | 675 | 38.5 | Plus |
