BS20565.complete Sequence
1091 bp assembled on 2011-01-11
GenBank Submission: KX804500
> BS20565.complete
GAAGTTATCAGTCGACATGGAACCGGTGCCCATCCGGCCAAAAGCGCCGG
GAGCGAGCAACCGCGGAGCCCTGCCGCTGGCGGCGAAGAAGCCGGCCAAG
AAGCGTACGTACCACTGCGGCGTTTGTTTTGCGGAGTTCTCTCGTCATCT
GGCCGCCAAGCGGCACGAGCAGCAGTGCTCCGTCAGGGTGAGGCGTCTTT
TCGTCTGCCCCCACTGCCTGACGCTTTTCGGCGAGGAGGCCCGGCTGGAG
CGGCATCGGGAGCGAAAGCACAACGATGGCCAGTTCCTGTGCCTGCAGTG
CGGCAAGAAGTACGCGTCAGCCACGTTTCTTTACCGTCATGTTGCCAGTT
GGCACGGCCAGCAGTCGCTGTTCTACTGCGACATGTGCACGGACAACTGC
AACGACGTTAAGACCTTTAGCGGGATGCTGGAGCTGCAGGAGCACGCCGA
GGAGGTGCATCGCCTGCGTACCCTGAAGTCCACGGCCAGTGATGCAGACA
GCCAGGTTGATGAAATGGAGGATCTTGAGATGCTAGAGGAGAACATTGAG
AACATACTGCCCAGCATCGACTGGGACGACGATCTCACCTTTGGCTGGCC
CACCGACCTGGACAAGGAGTCGTGCATTGTGAACGCTAAGCCGAGCGTTT
TCGTGTGTCCCTTCTGCGCCAACGGATTCCCCGGCAGTCTGAGCCTGGTG
CGGCACCTGGAGCAGGTTCACGAACGCAGTGCCCTGGACTGCTGCTACTG
TGGCAAGAGCCATGGCAGCCGAGAAGCCCTGCGGTCCCATCTGCAACGTG
TTCACATCCTCTTGCGCGGTCATGTGTGCGGTATTTGCCAGGCGGACTTC
GCCACTGCTGATCACCTAAAGAAGCACGTTAACAGTCTGCACCTGGACCA
CCGACCGCATCTGTGTCCCACGTGCGGAAAGAGATTCACCCAGCGGTGCC
ACCTCACCGATCACATAAAGACGGATCGCGGCCATGGACACGGCACTTAC
ACCTGTGAATTCTGCGTGCGGCCCTTCTTCCGGGCCATCGATCTCGAACG
GCATGTGTGTGAGGAACATCCGTAGAAGCTTTCTAGACCAT
BS20565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1059 | CG7101-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1454 | CG7101-RA | 73..1131 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18831218..18831800 | 493..1075 | 2915 | 100 | Plus |
| X | 23542271 | X | 18830663..18831143 | 17..497 | 2405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:59:36 has no hits.
BS20565.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:16 Download gff for
BS20565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 98..1156 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:03 Download gff for
BS20565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 73..1131 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:44 Download gff for
BS20565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 73..1131 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:44 Download gff for
BS20565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18830663..18831143 | 17..497 | 100 | -> | Plus |
| X | 18831223..18831800 | 498..1075 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:03 Download gff for
BS20565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18724696..18725176 | 17..497 | 100 | -> | Plus |
| arm_X | 18725256..18725833 | 498..1075 | 100 | | Plus |
BS20565.pep Sequence
Translation from 16 to 1074
> BS20565.pep
MEPVPIRPKAPGASNRGALPLAAKKPAKKRTYHCGVCFAEFSRHLAAKRH
EQQCSVRVRRLFVCPHCLTLFGEEARLERHRERKHNDGQFLCLQCGKKYA
SATFLYRHVASWHGQQSLFYCDMCTDNCNDVKTFSGMLELQEHAEEVHRL
RTLKSTASDADSQVDEMEDLEMLEENIENILPSIDWDDDLTFGWPTDLDK
ESCIVNAKPSVFVCPFCANGFPGSLSLVRHLEQVHERSALDCCYCGKSHG
SREALRSHLQRVHILLRGHVCGICQADFATADHLKKHVNSLHLDHRPHLC
PTCGKRFTQRCHLTDHIKTDRGHGHGTYTCEFCVRPFFRAIDLERHVCEE
HP*
BS20565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-PA | 352 | CG7101-PA | 1..352 | 1..352 | 1959 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 244..552 | 27..351 | 266 | 25 | Plus |
| crol-PF | 907 | CG14938-PF | 244..549 | 27..347 | 266 | 25.5 | Plus |
| crol-PD | 878 | CG14938-PD | 244..520 | 27..347 | 261 | 25.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 105..410 | 27..351 | 248 | 25.5 | Plus |
| crol-PF | 907 | CG14938-PF | 287..671 | 14..352 | 222 | 21.3 | Plus |
| crol-PG | 878 | CG14938-PG | 277..642 | 32..352 | 220 | 22.1 | Plus |
| crol-PD | 878 | CG14938-PD | 277..642 | 32..352 | 217 | 21.7 | Plus |
| crol-PG | 878 | CG14938-PG | 222..492 | 63..347 | 212 | 25.1 | Plus |
| crol-PD | 878 | CG14938-PD | 222..492 | 63..347 | 196 | 23.7 | Plus |
