BS20569.complete Sequence
3494 bp assembled on 2011-02-17
GenBank Submission: KX806240
> BS20569.complete
GAAGTTATCAGTCGACATGTTAAAGTTTATCAGAGGAAAAGGGCAGCAGC
CCAGTGCTGACAGACAACGCTACATCACGGCACAGCATGGCTTTCCTCAT
AAGCCTTCGGCTCTTGCGTATGATCCAGTTTTGAAACTTATGGCAATAGG
GACGCAAACAGGGGCTTTAAAAGTTTTCGGTCAACCCGGAGTTGAATTGT
ACGGTCAGCATACTTTGTTAAACAATTCAGCATCGGAGCTTAATGTACAA
TTACTTGAATGGGTGTATGGAACTGGTCGCATACTTTCGTTGACGGCAGC
GAATCAATTAATTCTATGGGAGCCAGTTGGAGCAACGTTGCTGCCAATCA
AAACACTACCGTTTGACGGCAAACTTAAAAAAGTTTCATCGCTGTGCTGT
TCTCTCAGTAAGGATCTGCTATGGATTGGAACAGAAGGTGGAAACATCTA
TCAACTGGATTTACATACATTTACCATTAAGGAGCCTGTAATTTACCATG
ACGTTGTGCTAGAGCAGGTGCCACCAGCCTACAAGCTAAATCCTGGTGCA
ATTGAGTCAATCCGCCAACTTCCAAACTCCCCTAGCAAACTTCTAGTTGC
ATACAATCGCGGCCTTTGTGTTTTGTGGGATTTTGAAAGCGCATCTGTCC
AGCGAGCATACATAGCCCCTGGACATGGACAGAGCGTTGGTCTTACAGTG
AACTTCGAAGGATCTGAATTTACCTGGTACCACGCTGATGGTTCATACGC
CACTTGGAGCATAGATAACCCAGAACCGCCGTCGAATGTTAATTATGTGC
CTTATGGACCTGATCCATGCAAAAGCATAAATCGACTGTACAAAGGCAAG
CGAAGATCCAACGATGTAATTGTTTTTTCCGGCGGCATGCCACGGTCAGC
ATATGGTGATCACAATTGTGTGTCCGTTCACGCCAGCGATGGACACAAAG
TGTGTCTTGACTTTACGTCTAAAGTGATTGACTTTTTTGTGACCTTTGAA
AATAATAGAGATGTCGCTGAAGTTCTTGTTGTACTACTTGAAGAGGAACT
CTGCGCTTACGATCTTACTGACCCTAATATTTGTGCTATCAAAGCGCCAT
ATCTTCACTCTGTCCATGCATCAGCTGTCACTTGCAATTACCTTGCTTCT
GAAGTCGTACAGTCGGTATATGAAAGTATTTTAAGAGCTGGAGATGAACA
AGACATTGACTATAGCAATATTAGCTGGCCTATCACTGGCGGTACTCTCC
CGGATAACTTAGAAGAATCTGTAGAAGAGGACGCGACTAAGCTTTATGAG
ATTTTGTTAACTGGTCACGAAGATGGTTCTGTTAAATTTTGGGACTGCAC
TGGAGTGTTGCTTAAACCAATTTATAATTTTAAAACTAGCAGCATTTTTG
GAAGTGAGTCAGACTTCCGAGATGACGCAGCTGCAGATATGAGTGCGGAA
CAAGTCGATGAAGGAGAACCGCCATTTCGGAAATCAGGACTTTTTGATCC
TTATTCAGATGACCCTCGTTTAGCAGTGAAGAAAATAGCATTCTGCCCAA
AAACCGGACAACTTATTGTTGGTGGCACAGCGGGCCAAATAGTTATAGCC
GACTTCATAGACTTACCCGAAAAAGTGTCTTTAAAATACATTTCAATGAA
TTTGGTCAGCGATCGTGATGGATTTGTGTGGAAGGGTCACGATCAGTTAA
ACGTGCGATCGAACTTATTAGACGGAGAAGCAATTCCTACGACGGAACGT
GGTGTAAATATATCGGGAGTACTGCAAGTTTTGCCGCCAGCCAGCATAAC
ATGCATGGCACTCGAAGCAAGCTGGGGCCTAGTATCTGGTGGGACTGCGC
ACGGCTTAGTTCTCTTTGACTTCAAAAACTTTGTTCCAGTATTTCATCGC
TGCACTTTAAACCCAAATGATCTTACTGGAGCAGGAGAGCAGCTGTCTCG
TCGAAAGTCTTTTAAGAAATCATTGAGGGAGTCATTTAGAAAGCTTCGCA
AGGGTCGATCGACCAGGACCAACCAGAGCAATCAAGTACCAACAACGCTG
GAAGCAAGACCCGTCGAGAGGCAAATAGAGGCTCGTTGTGCAGATGACGG
GCTAGGATCCATGGTGCGATGTTTACTATTTGCCAAAACTTATGTTACTA
ATGTCAACATAACGTCGCCAACTTTGTGGTCAGCAACAAATGCCAGTACA
GTCTCGGTTTTCCTTCTGCATTTGCCACCAGCGCAGACCGCGGCAACTGC
CGTCCCGTCGGCAAGTGGCAATGCACCACCACACATGCCCCGCCGAATTT
CTGCGCAGCTTGCTAAAGAAATACAATTAAAACATCGTGCTCCTGTGGTG
GGTATTTCTATTTTTGATCAGGCGGGTAGCCCTGTCGATCAGCTGAACGC
CGGTGAAAACGGGAGTCCACCGCATCGTGTACTTATTGCTTCCGAGGAAC
AGTTCAAGGTGTTTTCACTTCCGCAACTAAAGCCGATTAACAAATATAAG
CTTACCGCTAACGAAGGTGCTCGGATTCGCCGCATCCATTTTGGTTCGTT
TAGTTGTCGCATATCCCCGGAAACACTGCAGAGTATGCACGGTTGTAGCC
CAACTAAGTCCACGCGTTCACATGGCGATGGAGAGGCGGATCCTAATATC
AGTGGAAGCTTGGCTGTAAGTCGTGGAGATGTATATAACGAAACAGCATT
GATATGTTTAACGAATATGGGCGATATCATGGTTTTATCAGTACCTGAAT
TAAAAAGACAGCTGAATGCCGCAGCAGTGCGACGGGAAGACATTAATGGA
GTTTCGTCACTTTGCTTTACAAACTCTGGAGAAGCACTGTATATGATGTC
TTCTTCTGAACTGCAGCGTATTGCTTTAGCCACGTCCAGAGTCGTGCAAC
CCACTGGCGTTGTTCCAGTAGAACCATTAGAAAATGAAGAGTCTGTGTTG
GAAGAAAATGATGCAGAGAATAATAAGGAAACCTACGCATGTGATGAAGT
TGTGAATACATATGAAATTAAAAATCCATCAGGCATTTCAATATGCACAA
GGCCTGCAGAGGAAAACGTTGGAAGAAATAGTGTTCAGCAAGTTAATGGA
GTCAACATTTCAAATTCACCTAATCAAGCTAACGAGACTATCAGCAGCTC
TATTGGCGATATTACCGTTGACTCGGTGCGCGACCATTTAAATATGACGA
CCACCACTTTGTGTTCTATTAATACAGAGGAAACCATTGGTCGCCTATCT
GTACTTAGCACGCAAACCAACAAAGCCAGTACTACCGTAAACATGAGTGA
AATTCCAAATATTAATATTTCTAATTTAGAGGACTTGGAATCGAAAAGAA
ATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTACA
AACATTTCTCATGAAAAAACGAACGGAGACAACAAAATAGGAACGCCAAA
AACAGCGCCTGAAGAAAGCCAATTTTAAAAGCTTTCTAGACCAT
BS20569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gl-RB | 3462 | CG2671-PB | 1..3462 | 17..3478 | 17310 | 100 | Plus |
| l(2)gl-RJ | 3486 | CG2671-PJ | 85..3486 | 77..3478 | 17010 | 100 | Plus |
| l(2)gl-RI | 3486 | CG2671-PI | 85..3486 | 77..3478 | 17010 | 100 | Plus |
| l(2)gl-RJ | 3486 | CG2671-PJ | 1..54 | 17..70 | 255 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gl-RB | 5155 | CG2671-RB | 317..3779 | 16..3478 | 17315 | 100 | Plus |
| l(2)gl-RF | 5082 | CG2671-RF | 239..3706 | 16..3478 | 17230 | 99.9 | Plus |
| l(2)gl-RE | 5225 | CG2671-RE | 382..3849 | 16..3478 | 17230 | 99.9 | Plus |
| l(2)gl-RB | 5155 | CG2671-RB | 3823..3928 | 3347..3452 | 365 | 89.6 | Plus |
| l(2)gl-RF | 5082 | CG2671-RF | 3750..3855 | 3347..3452 | 365 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13683..14876 | 2047..854 | 5970 | 100 | Minus |
| 2L | 23513712 | 2L | 14933..15711 | 855..77 | 3895 | 100 | Minus |
| 2L | 23513712 | 2L | 12286..12929 | 2796..2153 | 3220 | 100 | Minus |
| 2L | 23513712 | 2L | 11777..12221 | 3241..2797 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 11215..11346 | 3478..3347 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 11410..11519 | 3348..3239 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 13520..13626 | 2153..2047 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 11066..11171 | 3452..3347 | 365 | 89.6 | Minus |
| 2L | 23513712 | 2L | 19885..19945 | 76..16 | 305 | 100 | Minus |
| 2L | 23513712 | 2L | 17083..17136 | 70..17 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:25:15 has no hits.
BS20569.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:38 Download gff for
BS20569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RB | 319..3773 | 22..3476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:42 Download gff for
BS20569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RB | 323..3777 | 22..3476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:22 Download gff for
BS20569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RB | 323..3777 | 22..3476 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:22 Download gff for
BS20569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11217..11344 | 3349..3476 | 100 | <- | Minus |
| 2L | 11410..11518 | 3240..3348 | 100 | <- | Minus |
| 2L | 11779..12221 | 2797..3239 | 100 | <- | Minus |
| 2L | 12286..12928 | 2154..2796 | 100 | <- | Minus |
| 2L | 13520..13625 | 2048..2153 | 100 | <- | Minus |
| 2L | 13683..14874 | 856..2047 | 100 | <- | Minus |
| 2L | 14933..15711 | 77..855 | 100 | <- | Minus |
| 2L | 17075..17131 | 22..76 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:42 Download gff for
BS20569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11217..11344 | 3349..3476 | 100 | <- | Minus |
| arm_2L | 11410..11518 | 3240..3348 | 100 | <- | Minus |
| arm_2L | 11779..12221 | 2797..3239 | 100 | <- | Minus |
| arm_2L | 13520..13625 | 2048..2153 | 100 | <- | Minus |
| arm_2L | 12286..12928 | 2154..2796 | 100 | <- | Minus |
| arm_2L | 13683..14874 | 856..2047 | 100 | <- | Minus |
| arm_2L | 14933..15711 | 77..855 | 100 | <- | Minus |
| arm_2L | 17075..17131 | 22..76 | 91 | | Minus |
BS20569.pep Sequence
Translation from 16 to 3477
> BS20569.pep
MLKFIRGKGQQPSADRQRYITAQHGFPHKPSALAYDPVLKLMAIGTQTGA
LKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLIL
WEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLH
TFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGL
CVLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSID
NPEPPSNVNYVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHN
CVSVHASDGHKVCLDFTSKVIDFFVTFENNRDVAEVLVVLLEEELCAYDL
TDPNICAIKAPYLHSVHASAVTCNYLASEVVQSVYESILRAGDEQDIDYS
NISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVLLK
PIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDP
RLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDR
DGFVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALE
ASWGLVSGGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFK
KSLRESFRKLRKGRSTRTNQSNQVPTTLEARPVERQIEARCADDGLGSMV
RCLLFAKTYVTNVNITSPTLWSATNASTVSVFLLHLPPAQTAATAVPSAS
GNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPVDQLNAGENGS
PPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRIS
PETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALICLTN
MGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQ
RIALATSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYE
IKNPSGISICTRPAEENVGRNSVQQVNGVNISNSPNQANETISSSIGDIT
VDSVRDHLNMTTTTLCSINTEETIGRLSVLSTQTNKASTTVNMSEIPNIN
ISNLEDLESKRNTTETSTSSVVIKSIITNISHEKTNGDNKIGTPKTAPEE
SQF*
BS20569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gl-PB | 1153 | CG2671-PB | 1..1153 | 1..1153 | 5978 | 100 | Plus |
| l(2)gl-PJ | 1161 | CG2671-PJ | 1..1161 | 1..1153 | 5939 | 99.1 | Plus |
| l(2)gl-PI | 1161 | CG2671-PI | 1..1161 | 1..1153 | 5939 | 99.1 | Plus |
| l(2)gl-PH | 1161 | CG2671-PH | 1..1161 | 1..1153 | 5939 | 99.1 | Plus |
| l(2)gl-PG | 1161 | CG2671-PG | 1..1161 | 1..1153 | 5939 | 99.1 | Plus |
