BS20571.complete Sequence
749 bp assembled on 2011-01-11
GenBank Submission: KX802830
> BS20571.complete
GAAGTTATCAGTCGACATGGAAACGATCAATCCCACGTTCTCGTACCTCA
CCAATCTGGAGGTAATGCAGATTCTACAGAAGATCAAAAGCACCAAAAAG
AAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAGTA
TCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAATT
ACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGCAA
ATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATCGA
CGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCAGC
TGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGGAA
ACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAATC
TGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAATAG
CTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATGTC
GCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCAAG
CCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGAAG
CCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGTCC
AATCCGACACCAGATGGAGAAAACCTCGGGTAGAAGCTTTCTAGACCAT
BS20571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcp-RC | 717 | CG4875-PC | 1..717 | 17..733 | 3585 | 100 | Plus |
| Rcp-RB | 717 | CG4875-PB | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcp-RC | 1138 | CG4875-RC | 21..741 | 17..737 | 3590 | 99.9 | Plus |
| Rcp-RB | 1080 | CG4875-RB | 21..741 | 17..737 | 3590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16885075..16885520 | 292..737 | 2215 | 99.8 | Plus |
| X | 23542271 | X | 16884862..16885016 | 138..292 | 775 | 100 | Plus |
| X | 23542271 | X | 16884686..16884801 | 25..140 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:59:23 has no hits.
BS20571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:13 Download gff for
BS20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 19..735 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:58 Download gff for
BS20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 21..737 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:36 Download gff for
BS20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 21..737 | 17..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:36 Download gff for
BS20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16884864..16885016 | 140..292 | 100 | -> | Plus |
| X | 16884686..16884800 | 25..139 | 100 | -> | Plus |
| X | 16885076..16885516 | 293..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:58 Download gff for
BS20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16778897..16779049 | 140..292 | 100 | -> | Plus |
| arm_X | 16778719..16778833 | 25..139 | 100 | -> | Plus |
| arm_X | 16779109..16779549 | 293..733 | 100 | | Plus |
BS20571.pep Sequence
Translation from 16 to 732
> BS20571.pep
METINPTFSYLTNLEVMQILQKIKSTKKKFGMRNLATVTYEALQYLEESP
CKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLIDDNKAP
LTDEENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQSGVKRN
AQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETS
SSENNATPANEATTAPATDAPTSMETKSNPTPDGENLG*
BS20571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcp-PC | 238 | CG4875-PC | 1..238 | 1..238 | 1214 | 100 | Plus |
| Rcp-PB | 238 | CG4875-PB | 1..238 | 1..238 | 1214 | 100 | Plus |
