BS20574.complete Sequence
983 bp assembled on 2011-01-11
GenBank Submission: KX803552
> BS20574.complete
GAAGTTATCAGTCGACATGTATGTGAAATATCCCATGGCTGAGGTGCAGT
TGGTGAACGATCTTCTCCTCGATCTGCGGCACATGAAAAAAGATTGTCTG
GAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGC
TGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGC
GTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAG
GAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGT
GGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTG
CCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGT
GTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAGGAACAGTT
GGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCACGAGGAGC
AGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCACCGAGGAG
CTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGG
AGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACTGGAGGAGC
TGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCCTCGAAGAA
CAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCCACCATGCT
GACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAACACTCAACA
GTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTACAACAGGCC
TTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTATATTGATAC
CATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGAAGTCAAGC
CCATGGAGCGAAAGTAGAAGCTTTCTAGACCAT
BS20574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RD | 951 | CG33991-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
| nuf-RF | 1587 | CG33991-PF | 718..1587 | 98..967 | 4350 | 100 | Plus |
| nuf-RE | 1587 | CG33991-PE | 718..1587 | 98..967 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RD | 2448 | CG33991-RD | 303..1253 | 17..967 | 4755 | 100 | Plus |
| nuf-RF | 3099 | CG33991-RF | 1035..1904 | 98..967 | 4350 | 100 | Plus |
| nuf-RE | 3233 | CG33991-RE | 1169..2038 | 98..967 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14230654..14231112 | 231..689 | 2295 | 100 | Plus |
| 3L | 28110227 | 3L | 14231177..14231325 | 690..838 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 14230176..14230310 | 98..232 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 14231924..14232055 | 836..967 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 14230026..14230106 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:53:43 has no hits.
BS20574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:30 Download gff for
BS20574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 301..1251 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:53 Download gff for
BS20574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 303..1253 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:14 Download gff for
BS20574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 303..1253 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:14 Download gff for
BS20574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14230026..14230106 | 17..97 | 100 | -> | Plus |
| 3L | 14230176..14230310 | 98..232 | 100 | -> | Plus |
| 3L | 14230656..14231112 | 233..689 | 100 | -> | Plus |
| 3L | 14231177..14231325 | 690..838 | 100 | -> | Plus |
| 3L | 14231927..14232055 | 839..967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:53 Download gff for
BS20574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14223276..14223410 | 98..232 | 100 | -> | Plus |
| arm_3L | 14223126..14223206 | 17..97 | 100 | -> | Plus |
| arm_3L | 14223756..14224212 | 233..689 | 100 | -> | Plus |
| arm_3L | 14224277..14224425 | 690..838 | 100 | -> | Plus |
| arm_3L | 14225027..14225155 | 839..967 | 100 | | Plus |
BS20574.pep Sequence
Translation from 16 to 966
> BS20574.pep
MYVKYPMAEVQLVNDLLLDLRHMKKDCLELLQRKVDDLSDTQNIAEDRTT
RTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRHREILARVEREAS
LQNENCQMKIRATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARD
QIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMP
TTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVE
QGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNI
VENYPQLLEVKPMERK*
BS20574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-PD | 316 | CG33991-PD | 1..316 | 1..316 | 1576 | 100 | Plus |
| nuf-PB | 305 | CG33991-PB | 1..305 | 12..316 | 1445 | 96.1 | Plus |
| nuf-PA | 502 | CG33991-PA | 198..502 | 12..316 | 1445 | 96.1 | Plus |
| nuf-PC | 502 | CG33991-PC | 198..502 | 12..316 | 1445 | 96.1 | Plus |
| nuf-PM | 318 | CG33991-PM | 1..318 | 12..316 | 1421 | 92.1 | Plus |
