BS20575.complete Sequence
641 bp assembled on 2011-01-11
GenBank Submission: KX803655
> BS20575.complete
GAAGTTATCAGTCGACATGTCGAACAGATTGTTGGAATCCCTTATCTACT
GGCGCGATGTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACA
CTGGCGGCCATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTC
GCTCCTAACCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGA
CACAGGCCGTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTG
GAGCTGGATCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGT
GGCTGTGGCACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTC
TTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTC
TTCACCTACGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGC
CTTTGTCTCGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAAT
CGATCGACACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACC
GACAAGATCCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGC
TGCCGAGTCTGAGAAGGACAAGTAAAAGCTTTCTAGACCAT
BS20575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-RC | 609 | CG33113-PC | 1..609 | 17..625 | 3045 | 100 | Plus |
| Rtnl1-RF | 1788 | CG33113-PF | 1190..1788 | 27..625 | 2980 | 99.8 | Plus |
| Rtnl1-RG | 675 | CG33113-PG | 81..675 | 31..625 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-RC | 1267 | CG33113-RC | 92..701 | 17..626 | 3050 | 100 | Plus |
| Rtnl1-RF | 2700 | CG33113-RF | 1535..2134 | 27..626 | 2985 | 99.8 | Plus |
| Rtnl1-RG | 2271 | CG33113-RG | 277..872 | 31..626 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4994508..4994716 | 449..241 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994786..4994994 | 241..33 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994338..4994445 | 556..449 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 4994207..4994277 | 626..556 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:53:53 has no hits.
BS20575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:31 Download gff for
BS20575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 139..745 | 17..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:54 Download gff for
BS20575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 92..698 | 17..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:18 Download gff for
BS20575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 92..698 | 17..623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:18 Download gff for
BS20575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4994210..4994277 | 556..623 | 100 | <- | Minus |
| 2L | 4994339..4994444 | 450..555 | 100 | <- | Minus |
| 2L | 4994508..4994716 | 241..449 | 100 | <- | Minus |
| 2L | 4994787..4994994 | 33..240 | 100 | <- | Minus |
| 2L | 4995376..4995391 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:54 Download gff for
BS20575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4994210..4994277 | 556..623 | 100 | <- | Minus |
| arm_2L | 4994339..4994444 | 450..555 | 100 | <- | Minus |
| arm_2L | 4994508..4994716 | 241..449 | 100 | <- | Minus |
| arm_2L | 4994787..4994994 | 33..240 | 100 | <- | Minus |
| arm_2L | 4995376..4995391 | 17..32 | 100 | | Minus |
BS20575.pep Sequence
Translation from 16 to 624
> BS20575.pep
MSNRLLESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLF
GTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHI
NGFISELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLF
TLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEK
DK*
BS20575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-PC | 202 | CG33113-PC | 1..202 | 1..202 | 1008 | 100 | Plus |
| Rtnl1-PG | 224 | CG33113-PG | 23..224 | 1..202 | 985 | 97.5 | Plus |
| Rtnl1-PD | 224 | CG33113-PD | 23..224 | 1..202 | 985 | 97.5 | Plus |
| Rtnl1-PL | 222 | CG33113-PL | 26..222 | 6..202 | 982 | 99.5 | Plus |
| Rtnl1-PA | 222 | CG33113-PA | 26..222 | 6..202 | 981 | 99.5 | Plus |
