BS20578.complete Sequence
1064 bp assembled on 2011-01-11
GenBank Submission: KX800955
> BS20578.complete
GAAGTTATCAGTCGACATGTATAAGGGTGGTCGGACACCTTCTATTAGGT
CCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTATATCCACACTATCC
CCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGTTTGAACGTCTTCG
ACTATCCTACAAAATTGCAATCGACCAAAGAAGATCCAGAAGCTGCCGTG
GCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAAAACAGTTAGTCGC
AATGATTCACAGTCTACATTTAAACCAATAATACCAAGAGAGTTGCAAGC
TGATTTCGTTAAACCAGCGCGAATCGATATATTACTTGATATGCCGCCAG
CATCTCGAGATCTTCAATTGAAGCATTCATGGAACTCCGAAGATCGGTCT
CTTAACATTTTTGTAAAAGAGGACGACAAGTTGACATTTCATAGGCACCC
AGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTCGGACTTACAAAGG
GATTGCATATTTGGGAAATTTATTGGCCAACAAGGCAAAGAGGAACCCAC
GCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTACATTCAGTTGGCTA
CCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGCTGGGACTTAGGAA
GAAATAAATTATACCATGACTCAAAAAACTGCGCTGGAGTGACATATCCA
GCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAGATAAGTTCTTAGT
AGCGTTAGATATGGACGAAGGAACACTAAGCTTCATTGTTGATCAGCAGT
ACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAAACTATATCCAATT
GTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGCGTTACATTGGTGG
ATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGAACAATTC
GTCAAAAAATTGGTCGCACAAACTTGGAGGAGCACATTCAACAGCTTCAA
CTTCCTTTATCAATGAAAACATATTTATTGTATAAAAACCGTAGATAAAA
GCTTTCTAGACCAT
BS20578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 840 | CG2944-PM | 1..840 | 209..1048 | 4200 | 100 | Plus |
| gus-RL | 840 | CG2944-PL | 1..840 | 209..1048 | 4200 | 100 | Plus |
| gus-RK | 840 | CG2944-PK | 1..840 | 209..1048 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 163..1201 | 17..1055 | 5165 | 99.8 | Plus |
| gus-RK | 1813 | CG2944-RK | 332..1370 | 17..1055 | 5165 | 99.8 | Plus |
| gus-RJ | 1730 | CG2944-RJ | 368..1406 | 17..1055 | 5165 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 908..19 | 4450 | 100 | Minus |
| 2R | 25286936 | 2R | 5117656..5117802 | 1055..909 | 705 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:54:03 has no hits.
BS20578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:32 Download gff for
BS20578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RB | 86..1115 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:55 Download gff for
BS20578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RJ | 368..1397 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:21 Download gff for
BS20578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RJ | 368..1397 | 17..1046 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:21 Download gff for
BS20578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117665..5117802 | 909..1046 | 100 | <- | Minus |
| 2R | 5120763..5121654 | 17..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:55 Download gff for
BS20578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005170..1005307 | 909..1046 | 100 | <- | Minus |
| arm_2R | 1008268..1009159 | 17..908 | 99 | | Minus |
BS20578.pep Sequence
Translation from 16 to 1047
> BS20578.pep
MYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERLRLSYKI
AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKP
ARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQST
DCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVG
STEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMD
EGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLDPEP
LPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRR*
BS20578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-PM | 279 | CG2944-PM | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PL | 279 | CG2944-PL | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PK | 279 | CG2944-PK | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PJ | 279 | CG2944-PJ | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PI | 279 | CG2944-PI | 1..279 | 65..343 | 1486 | 100 | Plus |
