BS20579.complete Sequence
1784 bp assembled on 2011-02-17
GenBank Submission: KX805695
> BS20579.complete
GAAGTTATCAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTT
CACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGC
CTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTAC
TGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGC
ACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATG
GTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGA
TTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGC
CCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACC
ACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACCGACACCAAC
TCTGCACAGCATGCCTTCTCCGGCCACCAAGTGCAAACCCATCGAGCCTA
ACAACAACAGCAACGACAGTAGCGGGAATTTTAGTTCGGGTTCTGGTCAC
AGCAATGGAAATGGCAGTTTTATCAAGCAACGGGTGGAGCGACTTTACGG
GCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCCAAAAAGCACGGCCAGT
CACCATCGAATGCTGCAGGGCGATCGGAAAGGGGGCAGGTGGAGATCGAC
TCTCTACAAGGCTCCGAACTGGCTCGGAAATTCAAGCAGCTCTCCCCCAG
TAAAGACTATGGGGAGTTTCGAAAAAAAATGCAGAAGAAGTGTTCTCAGA
GTACAACGGCGAGGATAGACGAGCCGTTGCATTCTCCAGGGCTTAACGGA
GATCTTGACCTGCCCGTGTTTAGGCACCTTAGTCAAGAGTTCCGCGCCCA
GTTGCCTACTGTGTCACCAAAAAGGGGTGCTCCTCGATCTTGCATGGCTC
CTGATGTACTGCTTGTAGATAACGAGTCAAGTCCAGACCATGGTCCCACA
GATGAAGTAGACCACGAATCCACAAAAATGGACAAACTAGCCTCAGAGGA
ATACATCAGCACTTCCAATATTTCTGTTGAAGCTGTTGTTAAGGATGGAA
ATTTCTTTCTGAAAATACTAAAAGAGGAACAAAGCCGTCTCTTGGTGCTA
GCCGCTCTTGCTGAAAAATATGCAGACGCCTTGTCTACAAATCCAGATAT
CTCCGAAGATACCTTTGGGCTACTGCGATCAGCGTCGGGTAAGGCCCGTC
TCTTGGTATCGCAGAAAATGAAACAATTCGAGGGTCTTTGCCACAATAAT
CTGAATCGCTCACCAGAGGATAAGTTTCCAACAACTCTGGATGATTTACA
AGGATTCTGGGATATGGTTTATTTGCAGGTGGAGCACGTGGATTCTATTT
TTGCTGATATAGAGAAACTCAAAAGTAACGACTGGAAGGTAAAAGCACAG
TCCGTCGCTGACCAACCCGATTTGCACACCATACCAACTAAGACAATAAA
GCCGTCAAAAGTCGGTGTTTCGCAAGTGAAAACAGTCGGAAAGGCATCCA
GCGTTCGTGTGAATGGCTCGGCACCTCCCCCACCTAACTCGGCAGCAGCT
TTAAAGAGGGAGGCCCAGAGAAAACTGCTTCTAGAGATGAAACGTCAGCG
TCGCGAGGCTATGACCGCAGCGGCCAAATTGAATCCCATAAATGTTGATG
CCGACCCGGACGTGCCGGGAATAATTGGCGATAGTTGTGCTAATCCTAGC
GTTAGCAACGGAAGTTAAAAGCTTTCTAGACCAT
BS20579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RB | 1752 | CG8390-PB | 1..1752 | 17..1768 | 8760 | 100 | Plus |
| vlc-RI | 1818 | CG8390-PI | 491..1818 | 441..1768 | 6640 | 100 | Plus |
| vlc-RH | 1818 | CG8390-PH | 491..1818 | 441..1768 | 6640 | 100 | Plus |
| vlc-RI | 1818 | CG8390-PI | 1..424 | 17..440 | 2120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RB | 2388 | CG8390-RB | 116..1869 | 16..1769 | 8770 | 100 | Plus |
| vlc-RI | 2425 | CG8390-RI | 578..1906 | 441..1769 | 6645 | 100 | Plus |
| vlc-RH | 2369 | CG8390-RH | 522..1850 | 441..1769 | 6645 | 100 | Plus |
| vlc-RI | 2425 | CG8390-RI | 87..511 | 16..440 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5703471..5704216 | 441..1186 | 3730 | 100 | Plus |
| 2R | 25286936 | 2R | 5704434..5704920 | 1283..1769 | 2435 | 100 | Plus |
| 2R | 25286936 | 2R | 5703048..5703404 | 84..440 | 1785 | 100 | Plus |
| 2R | 25286936 | 2R | 5704286..5704384 | 1187..1285 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 5702877..5702947 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 451..523 | 122 | 63 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1854..1960 | 1159..1053 | 120 | 60.6 | Minus |
BS20579.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:40 Download gff for
BS20579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RB | 122..1871 | 17..1766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:57 Download gff for
BS20579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RB | 117..1866 | 17..1766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:57 Download gff for
BS20579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RB | 117..1866 | 17..1766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:57 Download gff for
BS20579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5702878..5702947 | 17..86 | 100 | -> | Plus |
| 2R | 5703051..5703404 | 87..440 | 100 | -> | Plus |
| 2R | 5703471..5704216 | 441..1186 | 100 | -> | Plus |
| 2R | 5704286..5704382 | 1187..1283 | 100 | -> | Plus |
| 2R | 5704435..5704917 | 1284..1766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:57 Download gff for
BS20579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1590383..1590452 | 17..86 | 100 | -> | Plus |
| arm_2R | 1590556..1590909 | 87..440 | 100 | -> | Plus |
| arm_2R | 1590976..1591721 | 441..1186 | 100 | -> | Plus |
| arm_2R | 1591791..1591887 | 1187..1283 | 100 | -> | Plus |
| arm_2R | 1591940..1592422 | 1284..1766 | 100 | | Plus |
BS20579.pep Sequence
Translation from 16 to 1767
> BS20579.pep
MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE
RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS
AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSPTPTLHSMP
SPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSFIKQRVERLYGPGALA
QGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKFKQLSPSKDYGE
FRKKMQKKCSQSTTARIDEPLHSPGLNGDLDLPVFRHLSQEFRAQLPTVS
PKRGAPRSCMAPDVLLVDNESSPDHGPTDEVDHESTKMDKLASEEYISTS
NISVEAVVKDGNFFLKILKEEQSRLLVLAALAEKYADALSTNPDISEDTF
GLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDM
VYLQVEHVDSIFADIEKLKSNDWKVKAQSVADQPDLHTIPTKTIKPSKVG
VSQVKTVGKASSVRVNGSAPPPPNSAAALKREAQRKLLLEMKRQRREAMT
AAAKLNPINVDADPDVPGIIGDSCANPSVSNGS*
BS20579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-PB | 583 | CG8390-PB | 1..583 | 1..583 | 3016 | 100 | Plus |
| vlc-PI | 605 | CG8390-PI | 1..605 | 1..583 | 2975 | 96.2 | Plus |
| vlc-PH | 605 | CG8390-PH | 1..605 | 1..583 | 2975 | 96.2 | Plus |
| vlc-PG | 605 | CG8390-PG | 1..605 | 1..583 | 2975 | 96.2 | Plus |
| vlc-PF | 605 | CG8390-PF | 1..605 | 1..583 | 2975 | 96.2 | Plus |
