BS20580.complete Sequence
758 bp assembled on 2011-01-11
GenBank Submission: KX801775
> BS20580.complete
GAAGTTATCAGTCGACATGGCATGGGTTCCCAATTCGCAGTTCGAGGATG
ATCTGGTCGACATGGAGCCGGATTTCAATTTTGTCCATGGTCAACTGGCC
TACGACATGAAGAAGCAAGGGGAGTTTTGGCCGCGACCGAAATGCACATA
TGAATATCTGAAGTCCCGGGAAAAGAGGAATTCCGAGCTCGAAAATATCC
ATGGAAGCAGAGGCGGAACTGGTCGTGATATTCGGCAAAGCCTTCAGCTA
ATGGAGAACATACAGAAGATAGCAGGCACAAGGCCGCTGGGCGAGCACGC
CACTATGAAAGATTGGGAGGATGAAAGCACAAATGAGCTAGAGGCGTTAG
CCATGATGCGTCACTTCGGAATGATGTCCATGGCAACAGATTCGCTGCCC
GTTCTGCCCGAAGTAAAACCACCAGAAGGACCCATTAAAATTATAAGAAA
CGGACGGAAACAATTTCCCCTCATCACAGACCCCGAATTTTTTAAACCAC
GCAAGATTCCCCGAACGAAGAATTCCAGTTCCAGTAGTTCGTATCATACT
GCCAATAGTTCAATCAGTTCCTTCAGCCTTTATGAATCTGCCGCTTCAGA
TTTGGACAGCAGCAAGAAGCAGGGCGAGATCAAGGCGTCAAAGTCGGAGA
AATACCTCGAAGTACCTTACAAACAGCTTGCGGAGAGTTACGACCAGGAA
GTGGAATCACCAGTCCAATTTGGAAACCAATTCAATGAATGAAAGCTTTC
TAGACCAT
BS20580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-RC | 726 | CG4711-PC | 1..726 | 17..742 | 3630 | 100 | Plus |
| squ-RB | 726 | CG4711-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
| squ-RA | 726 | CG4711-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-RC | 1171 | CG4711-RC | 236..963 | 16..743 | 3640 | 100 | Plus |
| squ-RB | 1029 | CG4711-RB | 94..821 | 16..743 | 3640 | 100 | Plus |
| squ-RA | 1372 | CG4711-RA | 437..1164 | 16..743 | 3640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16680718..16681445 | 16..743 | 3640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:54:13 has no hits.
BS20580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:33 Download gff for
BS20580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 436..1160 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:57 Download gff for
BS20580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 438..1162 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:25 Download gff for
BS20580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 438..1162 | 17..741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:25 Download gff for
BS20580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16680719..16681443 | 17..741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:57 Download gff for
BS20580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16680719..16681443 | 17..741 | 100 | | Plus |
BS20580.pep Sequence
Translation from 16 to 741
> BS20580.pep
MAWVPNSQFEDDLVDMEPDFNFVHGQLAYDMKKQGEFWPRPKCTYEYLKS
REKRNSELENIHGSRGGTGRDIRQSLQLMENIQKIAGTRPLGEHATMKDW
EDESTNELEALAMMRHFGMMSMATDSLPVLPEVKPPEGPIKIIRNGRKQF
PLITDPEFFKPRKIPRTKNSSSSSSYHTANSSISSFSLYESAASDLDSSK
KQGEIKASKSEKYLEVPYKQLAESYDQEVESPVQFGNQFNE*
BS20580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-PC | 241 | CG4711-PC | 1..241 | 1..241 | 1264 | 100 | Plus |
| squ-PB | 241 | CG4711-PB | 1..241 | 1..241 | 1264 | 100 | Plus |
| squ-PA | 241 | CG4711-PA | 1..241 | 1..241 | 1264 | 100 | Plus |
| CG15484-PA | 206 | CG15484-PA | 1..182 | 1..181 | 457 | 49.7 | Plus |
