BS20583.complete Sequence
3950 bp assembled on 2011-02-17
GenBank Submission: KX801182
> BS20583.complete
GAAGTTATCAGTCGACATGTTTCAGCGACACACGTCGGTGATCGATCTTC
ATCGTTGGAATTATCCTGAATGCTGGCCGTTTGATAGAAACGGAAAAGTC
GAAAACATATATGTAATGGAACATTCCGATCCCGTGCCTTATCAACAGCT
ATCGACATTATCGCCGACCACCGCACTATACTCGAACTTTAACAACTCTT
TGGAAGCAGGAACCGCAGAAAGACTACGCCTTAATAAAACTGGGTCACAG
GTCCACAGCCTATATGTCGGCGACGGTCAAGTGCAAAATGCTTCTGAACC
CTTATCTTTTCCCAGCCACCTTAATCTGTACCAATATGTTCGTACCCCGG
CAAACTTCACTATTAACAGCCGCAACCGATATATTCCGTACTATAACAAT
CGTTCCTACTCTGCTTCAACAACTGGTTTCCCTATAGCCAGTACTCCGCT
GATCAGCAGCCATGCGCACATCCAAGACCAACAAGGTGCAGCGTCTTATC
AAACGATTGTTCCGCTTTATCAGACCGCAAGCCACTGTGCGCAGCAACAT
ACAACATTGGCATCGGTAGCTCCAATCGTGGACAATTCATTCGTTGAAAG
CACCACTTGCCCCATGGCCGGCATCACCTCTCACAACATCAAAATGAAAA
TGATTCCTCCCAATGTATTGTTGCCTTGCTCCAGGCCTACGACAACCGCG
GTGACCATCCAAAGGTCAACCGGAGAAGACGGTGGAGATAAAGAAGGTCA
TACTTTTGCTAAGATTACGGAGATGAGCGATGCTGTTACTTTGCAGATCA
CCAACTTGGACTACTCGCTGGACGAATCACATATACGCAGCTTTCTACTT
AATCAGCTTAAGCCCATTACGCCAGTTGTGTCACTTGTCTTCGAGGGAAG
CTCCTATGCCAAAGTCACTGTTCCAGATCTTTATTTCGCAAAGCAGGTCG
TCTCCAATTTGCACCGCAAGAAGATTGGACACAAACGCATGCTGGTCAGT
TATACTCGAGATTCCTCCCTCACCGAGGTCAACACACTCCGCTGCCAGGT
CGCAGGACTTCTAAAGGATGTCCCATTCAACACCCTCCCCATGTATAAGT
TTAGAGAACTATTTCAGTCCCGCTTCAAAACCTCTATCAGTGTTTTAGAT
TTGTACAAAATGCAAGACATATGTACCATTAACTCGGATAACAATGAAGA
AAAGTTTATCAGCTTAAATCCGGAATTAGTAAACACCCTCGATATATCCC
CCTTAATGGAAGGACTCCAACATAGTGTTCCTTACTGTAGTATTCATTTT
AAAAAGGAGCAGCACAAGGGATGGGCCGAGCAGGAAATCGAGCCACTACC
AAACGTCTTCATGAGCATTTCGGAAATTCAGAAACTAATTTATCCACTTC
TCAAGGTACACACGGGGGATATTCCGGTGGCTACCCTTCTTCACTGCGTT
AAAGAAGAGCTTAATGTGTCAATAATGGCGAACGAAAATGGCGTTAACTT
GGAGCATTTGATCTGCTGTGTTCAGGGAATTCAAGTTCGGGCAAACAATT
TTGGAATTAAAATTCTCGGATGGTTAGAAATAAACAAAGAAATGCAATCA
GGAACTTTTAATGCCAGTTCTAATACATGTAGCCTGACTGCAAGTGATCG
CACAAATTGTGGAAGCTATTTCAAAAACTCAGTTGCCGATCCGCTTTTCC
AAATTTCCCGGGAGGTTATAGAGCTGCTAAAGATGTCACCAAAATCAACT
ATGAAATTCAACCGTTTTATTCCGGCCTACCACAATCACTTTGGAAAGCA
ATGTCGAGTTGCAGACTATGGCTATACAAAGTTAATCGAATTGTTTGAGG
CATTATCAAACGTTGTCCAAATTATGGGAGACGGCGAAAATCGTCAAATT
ACGCTATCCCACCGTATTCAAATACGCAGGTTTACATCAGACTTATTGCG
TGTATTGCGCGCTAATGGTAACAACTCAGTCCTGCTTTCCCAGTTGCCAT
TAGTTTTTACACAGACCCAAAATAAAACTTTTGATATTACTGATTATGGA
GTGTGCGACCTTATAGACATTCTAGACGGCTTGGTAAGCTCCAACATCGT
GACTTTAGGCGCAGCACAGAACGGAAAAGATATTCTTATATCAATGCCAA
AACGAAAGCAGACAAACAGTGAATTGGAGAAAACGTGTGTGTTCGCCGGC
GAAATGGTTGAGCTCTTCCAAAACGCTCTTCAGTACACTATTCTATTTCA
GAAGTTTGTACGGTCCTATCATTACCACTTTGCATACCAATGTCGTCTCA
GTGATTACGGCTTTCTTAAATTGGCCGATCTTCTAGATGCAATTAATGGT
TTGGTGGAAATGAAGTTGACAAGTGATGAGGACAAGAAAATAGTTCTCTC
CCCACAAGTAGCTAGAAGAGTTTTCGCTGAACAATGTGAAAACCTAATTC
GCAATGCCACAGGAAACTCATCGCATTGTATGAAGCTAGAACAGGTGCTG
GTATTGCACAAAAAGAAATATGGCTACCAAATTCAGCCGAAAACTTTGGG
AGTCATGGATATGGCTACGGCAGTTGAGCTGTTGCCTTACGTCGAGCTAA
AGAAAAAAGAACAGGCCATTTGGCTCATCTGTCACAACAACGATCATGAA
TTTCGTTTTCTTTGCTATAGGGTGTGTAAGTATGTCATGGAAAGGGACCC
TTCTGCATCAGTTTGGACAAACGTTAGAGGTGAAGTTAAGTTAACTAAAT
CTCAACAATTCGTAAAACCAATTGAAAAAAGCATATTGGTTAGGGATTTC
AATGCTAAGTATAAAGACCATCTTTCAGAGTCAGCTCTTTTAGCCATGCG
ACAAGCGATTGAGGTATATGATGATGGTGGCATACAGTGTATTCGTCTTA
CCCGTTTCATGAAGTTTATAATTGCCATTGTGCGTATGCTTGAACAGCGG
CCAAGCATGTATCTCTATGAGATCAAGAATGGTTTAAACTGTGGCCTTAG
CACCACTTTTGAATTCGGATTCCCAAATTTATATTCAGTGGTTGCAGCAC
ATAAAGACCTATTCAGTATTAACAACGGACCAACGCAAGAAAGAAGCGAG
GTTTCCATTAATATGAACTGTGAGCTTCGTCAAAGTTCTTTAAGCAAAGA
CCAGTGCGTCCTGGAATCCCAGAAGCTAACAAATTCCAAACATAGAGCAC
AACGGAGCTTCCATAGTCACATTGGCGAGCATAATGGACTTCCAATCAGT
CAGCCCCCCCTGAAACGAAGCGCAACAATCAATAATTGTTCAACATTCCA
AACATATCATGCTGATACCGACATATTTAATGTGCCAGCGAATTGTTTAC
CGCCAAGAACCAACTTATCATTGCCTAATAGTTTCGGATCATCTCTGGAA
AGTGGAAGTTTTTCCAATAGTTACAGCAACAAGGAAAACTCTATGAAATC
TCTTCACTTGTTCAACAGTTCATTTAATTCGTCTGGCGAGCTAAATGCCA
GTCTAGGCGCAGGAGATTTAACAAATATATCTTTAGGGACAGGTATCGCA
GTTGATACATCAAATGAACCATCCGAACTTTGGCGTAGACGTCAACAAAA
CTTTAATCGCCCTAATTCATCAAATTTTCGTAAATCAGATAATGGAACTG
ACGGTACTTACACCATTGGAAATTACATCGCACCACCAATAGGATCCATT
TACGAGCCACTAAAGTATAATGGTCAAGACAAAGAGAAATTACCCTTTTG
GATTGATCCCATTTGGAGCAAAGGATCGGAACAGCTCAGGCATGACATAC
TTAACATTCGACTTCCTAAGGCCAGAACAACTAAAACGTTTTCCAATATA
CTTTCGCCTTACACCATTTCGAAAAATGAAAATTTGAAGCGACAGTTGTT
TAGTTTTGATAATCACGATCGTAAAATAGCTTGAAAGCTTTCTAGACCAT
BS20583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RF | 3918 | CG17018-PF | 1..3918 | 17..3934 | 19590 | 100 | Plus |
| CG17018-RD | 3918 | CG17018-PD | 1..3918 | 17..3934 | 19590 | 100 | Plus |
| CG17018-RC | 3885 | CG17018-PC | 21..3885 | 70..3934 | 19325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RF | 4749 | CG17018-RF | 499..4416 | 17..3934 | 19590 | 100 | Plus |
| CG17018-RD | 4468 | CG17018-RD | 218..4135 | 17..3934 | 19590 | 100 | Plus |
| CG17018-RE | 4815 | CG17018-RE | 598..4462 | 70..3934 | 19325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22365375..22367176 | 1065..2866 | 9010 | 100 | Plus |
| 2L | 23513712 | 2L | 22363430..22364294 | 70..934 | 4325 | 100 | Plus |
| 2L | 23513712 | 2L | 22367566..22368176 | 3126..3736 | 3055 | 100 | Plus |
| 2L | 23513712 | 2L | 22367234..22367497 | 2862..3125 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 22368244..22368443 | 3735..3934 | 1000 | 100 | Plus |
| 2L | 23513712 | 2L | 22365193..22365325 | 935..1067 | 665 | 100 | Plus |
| 2L | 23513712 | 2L | 22354917..22354969 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:40 has no hits.
BS20583.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:19:07 Download gff for
BS20583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 220..4130 | 23..3933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:01 Download gff for
BS20583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 224..4134 | 23..3933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:00 Download gff for
BS20583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 224..4134 | 23..3933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:00 Download gff for
BS20583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22354923..22354969 | 23..69 | 100 | -> | Plus |
| 2L | 22363430..22364294 | 70..934 | 100 | -> | Plus |
| 2L | 22365193..22365324 | 935..1066 | 100 | -> | Plus |
| 2L | 22365377..22367173 | 1067..2863 | 100 | -> | Plus |
| 2L | 22367236..22367497 | 2864..3125 | 100 | -> | Plus |
| 2L | 22367566..22368176 | 3126..3736 | 100 | -> | Plus |
| 2L | 22368246..22368442 | 3737..3933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:01 Download gff for
BS20583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22354923..22354969 | 23..69 | 100 | -> | Plus |
| arm_2L | 22368246..22368442 | 3737..3933 | 100 | | Plus |
| arm_2L | 22363430..22364294 | 70..934 | 100 | -> | Plus |
| arm_2L | 22365193..22365324 | 935..1066 | 100 | -> | Plus |
| arm_2L | 22365377..22367173 | 1067..2863 | 100 | -> | Plus |
| arm_2L | 22367236..22367497 | 2864..3125 | 100 | -> | Plus |
| arm_2L | 22367566..22368176 | 3126..3736 | 100 | -> | Plus |
BS20583.pep Sequence
Translation from 16 to 3933
> BS20583.pep
MFQRHTSVIDLHRWNYPECWPFDRNGKVENIYVMEHSDPVPYQQLSTLSP
TTALYSNFNNSLEAGTAERLRLNKTGSQVHSLYVGDGQVQNASEPLSFPS
HLNLYQYVRTPANFTINSRNRYIPYYNNRSYSASTTGFPIASTPLISSHA
HIQDQQGAASYQTIVPLYQTASHCAQQHTTLASVAPIVDNSFVESTTCPM
AGITSHNIKMKMIPPNVLLPCSRPTTTAVTIQRSTGEDGGDKEGHTFAKI
TEMSDAVTLQITNLDYSLDESHIRSFLLNQLKPITPVVSLVFEGSSYAKV
TVPDLYFAKQVVSNLHRKKIGHKRMLVSYTRDSSLTEVNTLRCQVAGLLK
DVPFNTLPMYKFRELFQSRFKTSISVLDLYKMQDICTINSDNNEEKFISL
NPELVNTLDISPLMEGLQHSVPYCSIHFKKEQHKGWAEQEIEPLPNVFMS
ISEIQKLIYPLLKVHTGDIPVATLLHCVKEELNVSIMANENGVNLEHLIC
CVQGIQVRANNFGIKILGWLEINKEMQSGTFNASSNTCSLTASDRTNCGS
YFKNSVADPLFQISREVIELLKMSPKSTMKFNRFIPAYHNHFGKQCRVAD
YGYTKLIELFEALSNVVQIMGDGENRQITLSHRIQIRRFTSDLLRVLRAN
GNNSVLLSQLPLVFTQTQNKTFDITDYGVCDLIDILDGLVSSNIVTLGAA
QNGKDILISMPKRKQTNSELEKTCVFAGEMVELFQNALQYTILFQKFVRS
YHYHFAYQCRLSDYGFLKLADLLDAINGLVEMKLTSDEDKKIVLSPQVAR
RVFAEQCENLIRNATGNSSHCMKLEQVLVLHKKKYGYQIQPKTLGVMDMA
TAVELLPYVELKKKEQAIWLICHNNDHEFRFLCYRVCKYVMERDPSASVW
TNVRGEVKLTKSQQFVKPIEKSILVRDFNAKYKDHLSESALLAMRQAIEV
YDDGGIQCIRLTRFMKFIIAIVRMLEQRPSMYLYEIKNGLNCGLSTTFEF
GFPNLYSVVAAHKDLFSINNGPTQERSEVSINMNCELRQSSLSKDQCVLE
SQKLTNSKHRAQRSFHSHIGEHNGLPISQPPLKRSATINNCSTFQTYHAD
TDIFNVPANCLPPRTNLSLPNSFGSSLESGSFSNSYSNKENSMKSLHLFN
SSFNSSGELNASLGAGDLTNISLGTGIAVDTSNEPSELWRRRQQNFNRPN
SSNFRKSDNGTDGTYTIGNYIAPPIGSIYEPLKYNGQDKEKLPFWIDPIW
SKGSEQLRHDILNIRLPKARTTKTFSNILSPYTISKNENLKRQLFSFDNH
DRKIA*
BS20583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-PF | 1305 | CG17018-PF | 1..1305 | 1..1305 | 6812 | 100 | Plus |
| CG17018-PD | 1305 | CG17018-PD | 1..1305 | 1..1305 | 6812 | 100 | Plus |
| CG17018-PC | 1294 | CG17018-PC | 8..1294 | 19..1305 | 6707 | 100 | Plus |
| CG17018-PE | 1272 | CG17018-PE | 1..1272 | 34..1305 | 6616 | 100 | Plus |
| CG17018-PA | 1272 | CG17018-PA | 1..1272 | 34..1305 | 6616 | 100 | Plus |
