BS20584.complete Sequence
3107 bp assembled on 2011-02-17
GenBank Submission: KX803258
> BS20584.complete
GAAGTTATCAGTCGACATGTTAGCCCGCGCTATCCGAGTGCGCCCCATGA
TGCGTGGCATCGCCTCGTCGTCAGTGTGGAACCGGAATCGTCCCATTCAG
AGTTCCCTGATGCAATACTGCCGGGATCGGTCGTTGCGCCTCCAGCGGCT
CCACGGAGCCAATTTGATGGTGCAGCGCTTCTACAGCCGCAAGCGGGATG
ATTCCAACGGGGATATTATTATGGGACCCGATCTTATGTCCGATCAAGAT
ACCCATCTTCCGGCAACTGTGGCGGTGCCGGACGTGTGGCCACATGTTCC
GTTGTTGGCCATGCGCAAGAATCCTCTCTTTCCCCGCTTTATGAAGATAG
TGGAGGTATCCAATCCCATCATCATGGATCTACTCCGTCGCAAAGTCAAG
CTGAATCAACCTTACGTAGGCGTCTTCCTTAAGAAAACTGATGGCGAAGA
GGAGCTTATCACCAATTTGAATGATGTCTACAATCTCGGAACATTTGCAC
AAATCCAAGAGCTGCAGGATCTCGGTGATAAGCTGCGCATGGTTGTGGTG
GCCCATCGTCGTATTCGTATAACAGGTCAGGTGGTAGAGGACGTGCCACC
TCCTAAGCCCGTGAAAATGACAACTTTGCATTATCCTCTATTTAATATAA
AATTACAAATCCCAGCTGAAGATCAAAGCACTGATCAAGCGGATGCGGCA
CCTATAAAATCAAGATCCGACCCAGCCCGAAAGCCCCGTGGCCGAATTCC
CAGGAGTCGGACCGGAAAATCACGTGAATCGGCGGCTGCTGAAGAACTTA
TACAAAACCAGACTCTGGAGCCGCCACTGAAATCAGGCAAAGTCGAGTCA
TCGAGCTTGCCAAAGCCTCCAACAGAAGAAAAGATAGTGGAACCTGAGAC
TGGTGCCAAAGAAAATGTTAATCAATCTGCGCCCAGCGCCCAACCTGTTC
TTATTGTTGAAGTGGAGAACGTAAAGCAACCGATCTATAAACAAACGGAA
GAGGTGAAGGCATTAACTCAGGAGATAATCAAGACTCTTCGGGACATAAT
CACAATGAATCCCTTGTATAGAGAGAGTCTACAGCAGATGCTGCACCAAA
ATCAACGAGTTGTCGACAACCCCATTTATCTGTGCGATTTAGGAGCATCC
CTTTCCGCTGGAGAACCAGCTGAGCTGCAAAAAATTCTTGAGGAAACAGA
TATCCCAGAACGTCTACAATTGGCCTTAACTTTACTCAAAAAGGAGTTGG
AACTCTCCAGGCTCCAACAAAAAATTGGACGCGAAGTAGAGGAAAAAGTC
AAGCAGCAACATCGCAAATATATACTCCAGGAACAGTTGAAAGTCATCAA
AAAAGAACTGGGCATCGAAAAAGACGACAAGGATGCCATTGGTGAAAAGT
ACCGCGAAAAGCTGAAGGATAAGGTGGTTCCCGAAGCTATTATGACGGTT
ATTGATGAAGAACTCACCAAGCTGAACTTCCTGGAGAGTCATAGTTCCGA
GTTTAATGTAACTCGCAATTACCTCGACTGGCTTACTTCCCTACCTTGGG
GCGTTATCAGCACCGAAAATCTCTGCCTGGAGAAGGCCACTGAAACACTA
AACGACGATCACTACGGAATGGAGGATATCAAGAAGCGTATTTTAGAATT
TATTGCCGTCAGTTCCCTCAAGGGCTCTACGCAGGGCAAGATCTTGTGCT
TTCATGGACCCCCTGGTGTGGGCAAGACAAGCATAGCAAAGTCCATTGCA
CGCGCTTTGAATCGCGAGTACTTCCGCTTTAGTGTGGGCGGCATGACAGA
CGTTGCTGAGATCAAGGGACATCGCCGCACCTATGTGGGCGCAATGCCGG
GTAAACTGATTCAGTGCCTGAAGAAGACTAAGATTGAAAATCCTCTGGTA
CTCATCGACGAGGTGGACAAGATCGGCAAGGGCTACCAGGGAGATCCTAG
CTCAGCATTGTTAGAGCTACTAGATCCCGAGCAGAATGCGAATTTCCTGG
ACCACTACCTCGATGTGCCGGTAGACCTCTCGCGAGTGCTCTTCATCTGC
ACAGCTAATGTGATCGACACTATTCCCGAGCCTTTAAGAGATCGCATGGA
ATTGATTGAGATGTCTGGGTATGTTGCCGAAGAGAAGATCGCCATCGCTC
GTCAGTATCTGATGCCACAAGCGATGAAGGACTGTGGATTAACGGACAAG
CATATCAACATTTCCGAGGATGCCCTAAACATGCTGATTCGCAGTTATTG
CCGGGAATCCGGGGTGCGAAACCTGCAAAAGCATATCGAGAAAGTTATTC
GCAAGGTGGCCTTCCGAGTGGTCAAAAAAGAAGGCGAGCACTTTCCGGTT
AACGCTGATAATCTGACCACATTCCTGGGCAAACAAATCTTTAGCTCAGA
TCGCATGTACGCAACCACACCGGTGGGTGTAGTCATGGGTCTGGCCTGGA
CCGCCATGGGTGGTTCATCGCTTTACATCGAAACCTCAAGGCGTCACATT
CGCCAGGGGGCAAAAACAGATCCGAACACTGTCGCCGGATCGCTGCACAT
CACCGGAAATTTGGGAGATGTCATGAAGGAGTCGGCCCAAATAGCCTTAA
CGGTGGCGCGCAACTTTTTATATTCGCTGGAACCCAATAATCTGTTCTTA
GAGCAAGAGCACATTCACCTCCATGTTCCTGAAGGTGCCACACCGAAAGA
TGGCCCCAGTGCGGGCATCACCATTATTACAGCTCTCGTATCGTTGGCCA
CTGGAAAGCCGGTGCGCCAAGATATCGCTATGACGGGCGAAGTATCCCTG
AAGGGAAAAGTGCTACCCGTGGGTGGTATTAAGGAAAAGACGATTGCAGC
ACGTCGTAGTGGAGTGAATTGTCTTATTCTGCCTGTGGATAACAAGAAAG
ACTTCGAGGAGTTGCCCACGTACATTACAGATGGTCTGGAGGTTCACTTT
GCCACCACCTACGAGGATGTCTACAAGATAGCGTTTACTGATGTAACCGA
AACGACAACCAACAATGTTGAAGAGCAGGAGCCGCTGCAGAAGCTTTCCA
GTGCGGCCGCTGCCAAATCGGAGACGTGGCCTTATTCTTAGAAGCTTTCT
AGACCAT
BS20584.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lon-RC | 3075 | CG8798-PC | 1..3075 | 17..3091 | 15375 | 100 | Plus |
| Lon-RA | 3021 | CG8798-PA | 595..3021 | 665..3091 | 12135 | 100 | Plus |
| Lon-RA | 3021 | CG8798-PA | 1..595 | 17..611 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lon-RC | 3761 | CG8798-RC | 118..3193 | 17..3092 | 15380 | 100 | Plus |
| Lon-RA | 3707 | CG8798-RA | 712..3139 | 665..3092 | 12140 | 100 | Plus |
| Lon-RA | 3707 | CG8798-RA | 118..712 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19608980..19609709 | 2659..1930 | 3650 | 100 | Minus |
| 3L | 28110227 | 3L | 19610802..19611262 | 1071..611 | 2305 | 100 | Minus |
| 3L | 28110227 | 3L | 19609765..19610193 | 1930..1502 | 2130 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19611741..19612082 | 358..17 | 1710 | 100 | Minus |
| 3L | 28110227 | 3L | 19610252..19610556 | 1506..1202 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 19611325..19611582 | 611..354 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 19608425..19608668 | 3092..2849 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 19608731..19608921 | 2849..2659 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 19610615..19610746 | 1201..1070 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3722..3797 | 960..1035 | 128 | 63.2 | Plus |
BS20584.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:39 Download gff for
BS20584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8798-RC | 117..3186 | 22..3091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:06 Download gff for
BS20584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RC | 123..3192 | 22..3091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:50 Download gff for
BS20584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RC | 123..3192 | 22..3091 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:50 Download gff for
BS20584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19611325..19611580 | 356..611 | 100 | <- | Minus |
| 3L | 19610615..19610744 | 1072..1201 | 100 | <- | Minus |
| 3L | 19610802..19611261 | 612..1071 | 100 | <- | Minus |
| 3L | 19608426..19608668 | 2849..3091 | 100 | <- | Minus |
| 3L | 19608732..19608921 | 2659..2848 | 100 | <- | Minus |
| 3L | 19608981..19609709 | 1930..2658 | 100 | <- | Minus |
| 3L | 19609766..19610188 | 1507..1929 | 100 | <- | Minus |
| 3L | 19610252..19610556 | 1202..1506 | 100 | <- | Minus |
| 3L | 19611744..19612077 | 22..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:06 Download gff for
BS20584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19604844..19605177 | 22..355 | 100 | | Minus |
| arm_3L | 19601526..19601768 | 2849..3091 | 100 | <- | Minus |
| arm_3L | 19601832..19602021 | 2659..2848 | 100 | <- | Minus |
| arm_3L | 19602081..19602809 | 1930..2658 | 100 | <- | Minus |
| arm_3L | 19602866..19603288 | 1507..1929 | 100 | <- | Minus |
| arm_3L | 19603352..19603656 | 1202..1506 | 100 | <- | Minus |
| arm_3L | 19603715..19603844 | 1072..1201 | 100 | <- | Minus |
| arm_3L | 19603902..19604361 | 612..1071 | 100 | <- | Minus |
| arm_3L | 19604425..19604680 | 356..611 | 100 | <- | Minus |
BS20584.pep Sequence
Translation from 16 to 3090
> BS20584.pep
MLARAIRVRPMMRGIASSSVWNRNRPIQSSLMQYCRDRSLRLQRLHGANL
MVQRFYSRKRDDSNGDIIMGPDLMSDQDTHLPATVAVPDVWPHVPLLAMR
KNPLFPRFMKIVEVSNPIIMDLLRRKVKLNQPYVGVFLKKTDGEEELITN
LNDVYNLGTFAQIQELQDLGDKLRMVVVAHRRIRITGQVVEDVPPPKPVK
MTTLHYPLFNIKLQIPAEDQSTDQADAAPIKSRSDPARKPRGRIPRSRTG
KSRESAAAEELIQNQTLEPPLKSGKVESSSLPKPPTEEKIVEPETGAKEN
VNQSAPSAQPVLIVEVENVKQPIYKQTEEVKALTQEIIKTLRDIITMNPL
YRESLQQMLHQNQRVVDNPIYLCDLGASLSAGEPAELQKILEETDIPERL
QLALTLLKKELELSRLQQKIGREVEEKVKQQHRKYILQEQLKVIKKELGI
EKDDKDAIGEKYREKLKDKVVPEAIMTVIDEELTKLNFLESHSSEFNVTR
NYLDWLTSLPWGVISTENLCLEKATETLNDDHYGMEDIKKRILEFIAVSS
LKGSTQGKILCFHGPPGVGKTSIAKSIARALNREYFRFSVGGMTDVAEIK
GHRRTYVGAMPGKLIQCLKKTKIENPLVLIDEVDKIGKGYQGDPSSALLE
LLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMELIEMS
GYVAEEKIAIARQYLMPQAMKDCGLTDKHINISEDALNMLIRSYCRESGV
RNLQKHIEKVIRKVAFRVVKKEGEHFPVNADNLTTFLGKQIFSSDRMYAT
TPVGVVMGLAWTAMGGSSLYIETSRRHIRQGAKTDPNTVAGSLHITGNLG
DVMKESAQIALTVARNFLYSLEPNNLFLEQEHIHLHVPEGATPKDGPSAG
ITIITALVSLATGKPVRQDIAMTGEVSLKGKVLPVGGIKEKTIAARRSGV
NCLILPVDNKKDFEELPTYITDGLEVHFATTYEDVYKIAFTDVTETTTNN
VEEQEPLQKLSSAAAAKSETWPYS*
BS20584.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lon-PC | 1024 | CG8798-PC | 1..1024 | 1..1024 | 5225 | 100 | Plus |
| Lon-PA | 1006 | CG8798-PA | 1..1006 | 1..1024 | 5101 | 98.2 | Plus |
