BS20587.complete Sequence
872 bp assembled on 2011-01-11
GenBank Submission: KX803819
> BS20587.complete
GAAGTTATCAGTCGACATGGCCCTCAATGTCGATCATAAGATGCGTTTCC
GCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGGAGGAAATC
GCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATACGAGAAGTA
CCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTACGCCACGA
TTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACTGGCGCGCC
AAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTGCAGCACGC
CCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTTTAAGATCA
CCTTTGGTCGCAAGGGCACGAAGAAGCTGAAGGCGCACGGCATCGGTGTC
CACAGCGCCGAGGAGATCGAGGAGTTCGGCAAGGACGACCTGAAGGTGCT
CAGCGAGATGCTCGACTGCAAGCCTTTCTTCTTCGGCGACGAGCCCACCA
CCCTGGATGTGGTGGCCTTCGCTGTCCTCTCGCAGCTCCACTATCTGTCC
AAGGACATTGCGTATCCGCTGCGCGACTACATGACCGAGAAGTGCCCCAA
CTTGATTGGCCACGTATCTCGCATGAAGGACAAGTGCTTCCCCGACTGGG
ACGAGATCTGCACGAAGCTGGACCTCAATGCGCACATTCCCAAGCCAGAG
CCCGAGACCAAGGAGGGCAAGGAGGGTGGCGAGCAGGAGAAATCAAACGA
ACAGGAGGGCACTGAGGGCGACAAGATCGAGAAGGAGTTGGAGAAGGACA
AGTCAAACGAGAAGGAGTCGACCGAGGAGAACAAAGAGAAGGAGGAAACA
AAGTAAAAGCTTTCTAGACCAT
BS20587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fax-RD | 840 | CG4609-PD | 1..840 | 17..856 | 4200 | 100 | Plus |
| fax-RC | 1248 | CG4609-PC | 418..1248 | 26..856 | 4155 | 100 | Plus |
| fax-RE | 816 | CG4609-PE | 1..816 | 41..856 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fax-RD | 3274 | CG4609-RD | 114..954 | 17..857 | 4205 | 100 | Plus |
| fax-RE | 3209 | CG4609-RE | 58..889 | 26..857 | 4160 | 100 | Plus |
| fax-RC | 3153 | CG4609-RC | 784..1615 | 26..857 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16407020..16407359 | 365..26 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 16405501..16405838 | 700..363 | 1690 | 100 | Minus |
| 3L | 28110227 | 3L | 16405326..16405428 | 802..700 | 515 | 100 | Minus |
| 3L | 28110227 | 3L | 16405116..16405172 | 857..801 | 285 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 188..250 | 114 | 66.7 | Plus |
BS20587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:40 Download gff for
BS20587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RD | 110..947 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:07 Download gff for
BS20587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RD | 110..947 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:44 Download gff for
BS20587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RD | 114..951 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:44 Download gff for
BS20587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16405119..16405170 | 803..854 | 100 | <- | Minus |
| 3L | 16405326..16405428 | 700..802 | 100 | <- | Minus |
| 3L | 16405502..16405836 | 365..699 | 100 | <- | Minus |
| 3L | 16407021..16407359 | 26..364 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:07 Download gff for
BS20587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16398219..16398270 | 803..854 | 100 | <- | Minus |
| arm_3L | 16398426..16398528 | 700..802 | 100 | <- | Minus |
| arm_3L | 16398602..16398936 | 365..699 | 100 | <- | Minus |
| arm_3L | 16400121..16400459 | 26..364 | 100 | | Minus |
BS20587.pep Sequence
Translation from 16 to 855
> BS20587.pep
MALNVDHKMRFRSKKGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGL
TAEQRNVSYATIAMLENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRL
PNSILNFFFKITFGRKGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLD
CKPFFFGDEPTTLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHV
SRMKDKCFPDWDEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTE
GDKIEKELEKDKSNEKESTEENKEKEETK*
BS20587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fax-PD | 279 | CG4609-PD | 1..279 | 1..279 | 1469 | 100 | Plus |
| fax-PC | 415 | CG4609-PC | 140..415 | 4..279 | 1456 | 100 | Plus |
| fax-PB | 282 | CG4609-PB | 1..282 | 1..279 | 1455 | 98.9 | Plus |
| fax-PA | 418 | CG4609-PA | 140..418 | 4..279 | 1442 | 98.9 | Plus |
| fax-PE | 271 | CG4609-PE | 1..271 | 9..279 | 1427 | 100 | Plus |
