BS20589.complete Sequence
1856 bp assembled on 2011-02-17
GenBank Submission: KX802388
> BS20589.complete
GAAGTTATCAGTCGACATGACTCTGCCTTGCCGCTGTTGTTGTTGTTCCG
GCAAAGTGACAATCTTTCAATATTCAGCGAAAATGGTATCCGGTCGTCCT
CTACTCTACCTCTCACTGCCCGGTGTAGCATTTATACTCGGCGTCTTTTG
GTTTCGGCGTAGATATAAAAATTGTTTAGACAAGCCCGACGACGAGGACT
CATCGGCCATCAATGACTCGTCGATTGAACCAACTGTGCAGGCGCGCAAG
GCCAACGGAGTCCTGCAGAATGGCAAGCTGCCACAGCAGTCGGCCAGCAA
GTCGATGAACATCAACGGAACTTTAGTTAACGGTAGCGGAAGCGGTAGCG
GAAGTAGCAGTGATGAGAAGGACAGCCCCACTACCATGTTGTATGGTAAA
TCAGCACCAATCAAAATCCAGAGCAATGGACGCACTTCAAATGGCAAGCA
TCAGCAGCAGATCGATTCCGAAATACTGAAGTCAAAGATACAGGATGCCG
AACACAAGACACTCTGCTCCATAGACGAGGATTTCGAGAATCTATCGTCG
CCACGTGATTTACCCGATTCGGTAAATACACGCGTATCCTTCTACAATCG
TAAGGCTACCCAAAAGACGGTGGAACCGGTGGTGATTAAGGCCACGCGCA
CACCCAAAATATCGCCAGAGAACTCCTTCCTGGATACCAACTACACCAAC
AAGGAGTGCGAGCAGAACAACAACTGTGAGCCCAAGGAGGAGCCCTCCAA
GAAGGAGGCCGATCAGGAGGAGCTCGAGCAGGATCAGGAGCAGACGGTGC
TGAAGGAGGAAGTGGTGGATAGCAATGGTAATCAGAAGCGCAATGTGGAT
GCGGCCAGTCCATCGCTGAGCATTTGCAGTGTGCAATCGGGCGATTCTGG
CAAGGGATCCAGCTTGCCGCGCTCGGAGGCGACACGCGTGAAAACCACCT
ACGAGTTCCTCTTCCCGATCAGCTTGATTGGTCACCTGTACGGCCGCAAG
CGGGCGTTTATTAACCAAATCAAGGCCAAGACCCTGGCCAGCGTGTCTGT
AGGCAAGAATCCCTACTCGGGCAAGGTGCGCATCTGTACCATTGAGGGAA
CGGAGAGCGAGATTGATGCCGCCCTGGCCATGATCCGTCAACGTTTGCCG
GCCAAGCGCTATCCGAACTTCACCATGCAACGCATCCACTTTGCGCTTCC
CCAGACCATAGTTCCTCTTTCGACCGAAAGCCTCTACAATCTACAACTGA
AACTGATTGAGGGCATCAACAACGATGTGGTAGTGAGTGCGGTGCTATCT
GGGTCGCATATTTTCATCCAGCACCCGCTGCATCCCTCGCATCCATCGTT
GCCTTTGCTGCAGAAGCAGCTGTACGATAGCTACTCCACCATGGAGGCGC
CATTGCTGCCCAGTTTGGAGCTTAGTGCCGTGTGCGTGATACCCATCAAT
GATGTGTGGTATCGCGTCCAGATTGTCGACACAGATCCCGAGGACGAGGA
GCGTTGCGTAATCAAGTTTCTTGACTTTGGTGGCTACATGAATGTCGGCT
TCAACACACTGCGACAGATTCGCACCGATTTCATGAATGTGCCCTTCCAG
TCCACCGAATGCATCCTGTCCAACATTGAGCCCATCGGTGGCACCTGGTC
CATTGAGGCGGCCGAAATCCTCAACAAACTTACCAAAGGCATTGTCTTGC
AAGCACAAGTCGCCGGCTATAATAGTCACAACCTACCAGAAATCTTTTTA
TTCGCATCCCTAGGTCCCAATAATGTAATCTTTATCAATAAGGAGCTGGT
CGGCAGAAAGCTCGCCAAATGGGTGGAGATGAGTGACTAAAAGCTTTCTA
GACCAT
BS20589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RC | 1824 | CG3249-PC | 1..1824 | 17..1840 | 9120 | 100 | Plus |
| spoon-RA | 1758 | CG3249-PA | 1..1758 | 83..1840 | 8790 | 100 | Plus |
| spoon-RE | 1758 | CG3249-PE | 1..1758 | 83..1840 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RC | 4509 | CG3249-RC | 99..1926 | 17..1844 | 9125 | 99.9 | Plus |
| spoon-RD | 3668 | CG3249-RD | 743..2526 | 61..1844 | 8905 | 99.9 | Plus |
| spoon-RA | 3341 | CG3249-RA | 417..2199 | 62..1844 | 8900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416186..5417374 | 1250..62 | 5930 | 99.9 | Minus |
| X | 23542271 | X | 5415525..5415918 | 1640..1247 | 1970 | 100 | Minus |
| X | 23542271 | X | 5415322..5415456 | 1771..1637 | 675 | 100 | Minus |
| X | 23542271 | X | 5414969..5415041 | 1844..1772 | 350 | 98.6 | Minus |
| X | 23542271 | X | 5420194..5420238 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:37:14 has no hits.
BS20589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:42 Download gff for
BS20589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yu-RC | 99..1920 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:25 Download gff for
BS20589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RC | 99..1920 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:32 Download gff for
BS20589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RC | 99..1920 | 17..1838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:32 Download gff for
BS20589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5414975..5415041 | 1772..1838 | 100 | <- | Minus |
| X | 5415322..5415455 | 1638..1771 | 100 | <- | Minus |
| X | 5415528..5415918 | 1247..1637 | 100 | <- | Minus |
| X | 5416190..5417374 | 62..1246 | 100 | <- | Minus |
| X | 5420194..5420238 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:25 Download gff for
BS20589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5309008..5309074 | 1772..1838 | 100 | <- | Minus |
| arm_X | 5309355..5309488 | 1638..1771 | 100 | <- | Minus |
| arm_X | 5309561..5309951 | 1247..1637 | 100 | <- | Minus |
| arm_X | 5310223..5311407 | 62..1246 | 100 | <- | Minus |
| arm_X | 5314227..5314271 | 17..61 | 100 | | Minus |
BS20589.pep Sequence
Translation from 16 to 1839
> BS20589.pep
MTLPCRCCCCSGKVTIFQYSAKMVSGRPLLYLSLPGVAFILGVFWFRRRY
KNCLDKPDDEDSSAINDSSIEPTVQARKANGVLQNGKLPQQSASKSMNIN
GTLVNGSGSGSGSSSDEKDSPTTMLYGKSAPIKIQSNGRTSNGKHQQQID
SEILKSKIQDAEHKTLCSIDEDFENLSSPRDLPDSVNTRVSFYNRKATQK
TVEPVVIKATRTPKISPENSFLDTNYTNKECEQNNNCEPKEEPSKKEADQ
EELEQDQEQTVLKEEVVDSNGNQKRNVDAASPSLSICSVQSGDSGKGSSL
PRSEATRVKTTYEFLFPISLIGHLYGRKRAFINQIKAKTLASVSVGKNPY
SGKVRICTIEGTESEIDAALAMIRQRLPAKRYPNFTMQRIHFALPQTIVP
LSTESLYNLQLKLIEGINNDVVVSAVLSGSHIFIQHPLHPSHPSLPLLQK
QLYDSYSTMEAPLLPSLELSAVCVIPINDVWYRVQIVDTDPEDEERCVIK
FLDFGGYMNVGFNTLRQIRTDFMNVPFQSTECILSNIEPIGGTWSIEAAE
ILNKLTKGIVLQAQVAGYNSHNLPEIFLFASLGPNNVIFINKELVGRKLA
KWVEMSD*
BS20589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-PC | 607 | CG3249-PC | 1..607 | 1..607 | 3138 | 100 | Plus |
| spoon-PA | 585 | CG3249-PA | 1..585 | 23..607 | 3008 | 100 | Plus |
| spoon-PE | 585 | CG3249-PE | 1..585 | 23..607 | 3008 | 100 | Plus |
| spoon-PD | 585 | CG3249-PD | 1..585 | 23..607 | 3008 | 100 | Plus |
| papi-PD | 576 | CG7082-PD | 140..425 | 313..568 | 185 | 25.8 | Plus |
