BS20590.complete Sequence
1178 bp assembled on 2011-01-11
GenBank Submission: KX801986
> BS20590.complete
GAAGTTATCAGTCGACATGGACGCGACATTTCACCAAACCATGGAGAGCT
TGCAGTTGCCCAAGGAGCTGTACTGGGACCTCAAGATGGAGCCACAATCC
CCAACATCGGTTTTGGGCTCCGATCTGTTTCCGCTCACTGACTCAAACGA
TACGGAGTGGCTGTATGACGATAACTTTGCAAATGGCATTACTCTTATTG
GCGATGATGAAGCCTTGACCCTGGAAGAGGTAGCTTCTCTCCAGTTGCTT
AGTGATGAGGAGATGGTTGTGGAGATCTTTGACCTGAAAGATGAAGAATG
TCTTTTGGACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAACA
GCTTTCAGCCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAAC
AAAGTACAATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCGC
TGATTACCAGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACGC
CGCCGCAGTCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGCA
CAGCCAAAACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATAC
TCCTGATGTTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAACT
GGGTAGGCGGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATATC
GTCAATATGCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGCT
CAATGAGGACTGCGAGTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGCA
CAGGAAGCGGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGTT
CCAGAGCTTATCAGCAGCTCCTCCTCGCCAGCTCCTACAACCATCGAGCA
GTCTGCGTCCCAGCCAAAAAAGCGTACTCGCACTTACGGGCGCGGTGTAG
AGGATCGAAAGATCAGGAAAAAGGAGCAGAACAAGAACGCTGCCACACGA
TATCGCCAGAAAAAGAAACTTGAAATGGAGAATGTGCTGGGCGAGGAGCA
TGTGCTGTCTAAAGAAAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGGC
ACAACGAAATGCGCTATCTGCGCCAGCTGATTCGAGAGTTCTACCATGAA
CGCAAGCGCTAGAAGCTTTCTAGACCAT
BS20590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crc-RE | 1146 | CG8669-PE | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| crc-RA | 1146 | CG8669-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| crc-RF | 1119 | CG8669-PF | 169..1119 | 212..1162 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crc-RE | 2244 | CG8669-RE | 629..1774 | 17..1162 | 5730 | 100 | Plus |
| crc-RA | 1905 | CG8669-RA | 290..1435 | 17..1162 | 5730 | 100 | Plus |
| crc-RF | 1878 | CG8669-RF | 458..1408 | 212..1162 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21318484..21319057 | 589..1162 | 2870 | 100 | Plus |
| 2L | 23513712 | 2L | 21318125..21318419 | 295..589 | 1475 | 100 | Plus |
| 2L | 23513712 | 2L | 21311875..21312044 | 17..186 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 21312097..21312208 | 185..296 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:55:21 has no hits.
BS20590.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:43 Download gff for
BS20590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crc-RA | 302..1447 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:10 Download gff for
BS20590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crc-RA | 290..1435 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:52 Download gff for
BS20590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crc-RA | 290..1435 | 17..1162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:52 Download gff for
BS20590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21311875..21312043 | 17..185 | 100 | -> | Plus |
| 2L | 21312098..21312208 | 186..296 | 100 | -> | Plus |
| 2L | 21318127..21318419 | 297..589 | 100 | -> | Plus |
| 2L | 21318485..21319057 | 590..1162 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:10 Download gff for
BS20590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21311875..21312043 | 17..185 | 100 | -> | Plus |
| arm_2L | 21312098..21312208 | 186..296 | 100 | -> | Plus |
| arm_2L | 21318127..21318419 | 297..589 | 100 | -> | Plus |
| arm_2L | 21318485..21319057 | 590..1162 | 100 | | Plus |
BS20590.pep Sequence
Translation from 16 to 1161
> BS20590.pep
MDATFHQTMESLQLPKELYWDLKMEPQSPTSVLGSDLFPLTDSNDTEWLY
DDNFANGITLIGDDEALTLEEVASLQLLSDEEMVVEIFDLKDEECLLDQK
ATLNCIDYDSNSFQPNINVITQAIVPANKVQFGASSDAASLPSAADYQLN
DGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPVLVKAEQKVQCYTPDVTH
AASATPFNFTNWVGGSEIARENQLVDDIVNMRAKELELSTNWQQLNEDCE
SQASSSLDSRSTGSGVCSSIADADEDWVPELISSSSSPAPTTIEQSASQP
KKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKKKLEMENVLGEEHVLSKE
NEQLRRTLQERHNEMRYLRQLIREFYHERKR*
BS20590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crc-PE | 381 | CG8669-PE | 1..381 | 1..381 | 1968 | 100 | Plus |
| crc-PA | 381 | CG8669-PA | 1..381 | 1..381 | 1968 | 100 | Plus |
| crc-PF | 372 | CG8669-PF | 1..372 | 1..381 | 1902 | 97.6 | Plus |
| crc-PB | 298 | CG8669-PB | 11..298 | 94..381 | 1487 | 100 | Plus |
