BS20592.complete Sequence
854 bp assembled on 2011-01-11
GenBank Submission: KX806518
> BS20592.complete
GAAGTTATCAGTCGACATGAAGCCCCAGACAAGCGAGCAAAATGGCAGTG
GCCAAAATGGCGAGGGTGCCGCAGATGCCGTGGCCGTTGCCACGATCCCC
ACGGGCGAAGCCTCCGCCGCCTCCGCCACGTCCGGCACCGATCTAACGGT
CTCCAAAAACAGCCAGCAGCTGAAACTGGAAATGCTCAACTTGGAGCTGG
CCAGCAATGGAAGCGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAG
CTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACG
CTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGG
GACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACC
AAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGA
CGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCA
TGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTAT
TTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGA
AATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGATCG
CAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTCGTA
GAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAACAG
CAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCAAGA
CCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAATAGAAGCTTTCTAGA
CCAT
BS20592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RB | 822 | CG9441-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| Pu-RA | 975 | CG9441-PA | 352..975 | 215..838 | 3120 | 100 | Plus |
| Pu-RC | 927 | CG9441-PC | 304..927 | 215..838 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RB | 1625 | CG9441-RB | 159..983 | 15..839 | 4125 | 100 | Plus |
| Pu-RA | 1793 | CG9441-RA | 527..1151 | 215..839 | 3125 | 100 | Plus |
| Pu-RC | 1744 | CG9441-RC | 478..1102 | 215..839 | 3125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21179937..21180147 | 215..425 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 21175473..21175674 | 15..216 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 21181419..21181585 | 425..591 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 21181836..21181966 | 709..839 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 21181644..21181761 | 591..708 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:55:54 has no hits.
BS20592.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:45 Download gff for
BS20592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 159..974 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:15 Download gff for
BS20592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 161..976 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:06 Download gff for
BS20592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 161..976 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:06 Download gff for
BS20592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21175475..21175673 | 17..215 | 100 | -> | Plus |
| 2R | 21179938..21180147 | 216..425 | 100 | -> | Plus |
| 2R | 21181420..21181585 | 426..591 | 100 | -> | Plus |
| 2R | 21181645..21181761 | 592..708 | 100 | -> | Plus |
| 2R | 21181836..21181959 | 709..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:15 Download gff for
BS20592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17069150..17069266 | 592..708 | 100 | -> | Plus |
| arm_2R | 17069341..17069464 | 709..832 | 100 | | Plus |
| arm_2R | 17062980..17063178 | 17..215 | 100 | -> | Plus |
| arm_2R | 17067443..17067652 | 216..425 | 100 | -> | Plus |
| arm_2R | 17068925..17069090 | 426..591 | 100 | -> | Plus |
BS20592.pep Sequence
Translation from 16 to 837
> BS20592.pep
MKPQTSEQNGSGQNGEGAADAVAVATIPTGEASAASATSGTDLTVSKNSQ
QLKLEMLNLELASNGSGHEKCTFHHDLELDHKPPTREALLPDMARSYRLL
LGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHDE
MVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSRR
LQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTS
TMLGVFRDDPKTREEFLNLVNSK*
BS20592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-PB | 273 | CG9441-PB | 1..273 | 1..273 | 1389 | 100 | Plus |
| Pu-PC | 308 | CG9441-PC | 58..308 | 18..273 | 1088 | 85.2 | Plus |
| Pu-PA | 324 | CG9441-PA | 114..324 | 63..273 | 1071 | 98.6 | Plus |
