BS20596.complete Sequence
821 bp assembled on 2011-01-11
GenBank Submission: KX804381
> BS20596.complete
GAAGTTATCAGTCGACATGCGCGAAATTCAGGCCTCCCAATTTATGACGA
AAACAAATCGCTTGGTGATTTTGAGGCATGGCGAAAGTGATTTCAACATT
GAGAACAAATTCTGCGGTTGGCATGATGCGCCATTGAGTGAATTCGGCGT
CCAGGAGGCCCTGACTGTGGCGATTCCCGCGCTCGTCCAATCCGAGTTGG
AATTCGACGTGGTCTATTCATCCGTATTGAGCAGATCTCGTCAAACGGCC
GAATTGATACTCTCCAAGTTGAACTGCGCCTATGTGCCCATTAAGGAGGA
TTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGACTGGTTGCCGGAAAC
GAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTTCAGGCCTGGCGACGT
GGATACGACTGCGTACCGCCGCCCATCGATGAGAAGAACCGCTACTTCTA
CACCATTTGCAGCAATCCCATATTCGATGATGTTCCTCGCGGTGAGTTCC
CCCTCGCGGAATCCCTTCACATGTGCGTCGATCGAGTGAAACCCGTGTGG
AAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCGGGTACTAATGTGCGT
CCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACATTGAGGGAATCTCCA
ACGAGGCCATCGAAAAGGTTAACATTCCAAATTGCGTGCCACGCGTCTAT
GAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGCTGCCATCAATCTGGG
GGATCAGGAGTATATTAGGCGGAAGACAGCCCAGGTGGCAGCCATTGGTG
ACTGAAAGCTTTCTAGACCAT
BS20596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7059-RD | 789 | CG7059-PD | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG7059-RA | 804 | CG7059-PA | 33..804 | 34..805 | 3860 | 100 | Plus |
| CG7059-RC | 762 | CG7059-PC | 1..762 | 44..805 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7059-RD | 1261 | CG7059-RD | 207..995 | 17..805 | 3945 | 100 | Plus |
| CG7059-RC | 1238 | CG7059-RC | 201..972 | 34..805 | 3860 | 100 | Plus |
| CG7059-RA | 1332 | CG7059-RA | 295..1066 | 34..805 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22391368..22391864 | 146..642 | 2485 | 100 | Plus |
| 3R | 32079331 | 3R | 22391919..22392083 | 641..805 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 22391194..22391307 | 34..147 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:54:41 has no hits.
BS20596.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:32:38 Download gff for
BS20596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RD | 207..994 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:03 Download gff for
BS20596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RD | 207..994 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:37 Download gff for
BS20596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RD | 207..994 | 17..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:37 Download gff for
BS20596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22390186..22390202 | 17..33 | 100 | -> | Plus |
| 3R | 22391194..22391306 | 34..146 | 100 | -> | Plus |
| 3R | 22391369..22391863 | 147..641 | 100 | -> | Plus |
| 3R | 22391920..22392082 | 642..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:03 Download gff for
BS20596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18215908..18215924 | 17..33 | 100 | -> | Plus |
| arm_3R | 18216916..18217028 | 34..146 | 100 | -> | Plus |
| arm_3R | 18217091..18217585 | 147..641 | 100 | -> | Plus |
| arm_3R | 18217642..18217804 | 642..804 | 100 | | Plus |
BS20596.pep Sequence
Translation from 16 to 804
> BS20596.pep
MREIQASQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGVQEALT
VAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKEDWRLCE
RHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFYTICSN
PIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCVHGTVA
RALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLGDQEYI
RRKTAQVAAIGD*
BS20596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7059-PD | 262 | CG7059-PD | 1..262 | 1..262 | 1388 | 100 | Plus |
| CG7059-PA | 267 | CG7059-PA | 12..267 | 7..262 | 1360 | 100 | Plus |
| CG7059-PC | 253 | CG7059-PC | 1..253 | 10..262 | 1345 | 100 | Plus |
| Pglym78-PC | 255 | CG1721-PC | 6..252 | 15..261 | 501 | 41.4 | Plus |
| Pglym78-PB | 255 | CG1721-PB | 6..252 | 15..261 | 501 | 41.4 | Plus |
