BS20647.complete Sequence
734 bp assembled on 2011-01-11
GenBank Submission: KX804184
> BS20647.complete
GAAGTTATCAGTCGACATGAGTATACCTACCGGAATTCCGAACTGTCCGC
GCGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAG
GTCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCAC
GATCAAGAACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACG
ACTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGG
GTCTTTGATAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGC
CTGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGG
CACCACCCGGCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATCTGT
TCGCCATCCTTCCGCATCCTCAACCACGTGGGTGACACGGTGATGCGCAT
CGAAGGACCTTTCTGCACCTTTTCGCTCTGCGGCGACGTTGAGTTCAATG
TTGTTTCGCTCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCG
GGCCTGGCACGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTT
CCCACTGGACTTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACAT
TCCTCATAGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGAT
AGGCCCGGAATGCTTTAGAAGCTTTCTAGACCAT
BS20647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb1-RC | 999 | CG32056-PC | 295..999 | 14..718 | 3510 | 99.9 | Plus |
| scramb1-RB | 702 | CG32056-PB | 1..702 | 17..718 | 3510 | 100 | Plus |
| scramb1-RA | 1251 | CG32056-PA | 550..1251 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb1-RC | 1640 | CG32056-RC | 348..1052 | 14..718 | 3510 | 99.9 | Plus |
| scramb1-RB | 1655 | CG32056-RB | 364..1065 | 17..718 | 3510 | 100 | Plus |
| scramb1-RA | 2049 | CG32056-RA | 760..1461 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10221609..10222093 | 501..17 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 10221393..10221552 | 659..500 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 10221073..10221132 | 718..659 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:59:50 has no hits.
BS20647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:19 Download gff for
BS20647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RC | 349..1050 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:10 Download gff for
BS20647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 760..1461 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:51 Download gff for
BS20647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 760..1461 | 17..718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:51 Download gff for
BS20647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10221073..10221132 | 659..718 | 100 | <- | Minus |
| 3L | 10221394..10221552 | 500..658 | 100 | <- | Minus |
| 3L | 10221611..10222093 | 17..499 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:10 Download gff for
BS20647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10214494..10214652 | 500..658 | 100 | <- | Minus |
| arm_3L | 10214173..10214232 | 659..718 | 100 | <- | Minus |
| arm_3L | 10214711..10215193 | 17..499 | 100 | | Minus |
BS20647.pep Sequence
Translation from 16 to 717
> BS20647.pep
MSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNAL
GQKVYFAAEDNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCL
FPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVMRIEGPFC
TFSLCGDVEFNVVSLTGEKIGKISKQWSGLAREIFTDADFFGINFPLDLD
VRMKAVLLGATFLIDAMFFEKAGNQETDRPGML*
BS20647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb1-PB | 233 | CG32056-PB | 1..233 | 1..233 | 1250 | 100 | Plus |
| scramb1-PA | 416 | CG32056-PA | 184..416 | 1..233 | 1250 | 100 | Plus |
| scramb1-PC | 332 | CG32056-PC | 101..332 | 2..233 | 1245 | 100 | Plus |
| scramb2-PA | 263 | CG1893-PA | 42..263 | 1..221 | 749 | 59.9 | Plus |
| CG9084-PB | 275 | CG9084-PB | 67..272 | 13..220 | 236 | 29.1 | Plus |
