BS20658.complete Sequence
1088 bp assembled on 2011-01-11
GenBank Submission: KX802038
> BS20658.complete
GAAGTTATCAGTCGACATGCACATATGCATATACATGTCTATGTATAAGG
GTGGTCGGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGT
GTTTCATCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGA
GCCGAGGGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACC
AAAGAAGATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGT
GGCGGAGTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACC
AATAATACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCG
ATATATTACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCAT
TCATGGAACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGA
CAAGTTGACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTC
GCGGAAAAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGG
CCAACAAGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGA
TGCACCTTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAAC
AAAGTTGGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAA
AACTGCGCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTT
TTTAGTTCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACAC
TAAGCTTCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTG
CGAGGGAAAAAACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGA
AATAACAATGCGTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAA
TGGATCTTTGCCGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTG
GAGGAGCACATTCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTT
ATTGTATAAAAACCGTAGATAAAAGCTTTCTAGACCAT
BS20658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 840 | CG2944-PM | 1..840 | 233..1072 | 4200 | 100 | Plus |
| gus-RL | 840 | CG2944-PL | 1..840 | 233..1072 | 4200 | 100 | Plus |
| gus-RK | 840 | CG2944-PK | 1..840 | 233..1072 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 139..1201 | 17..1079 | 5285 | 99.8 | Plus |
| gus-RK | 1813 | CG2944-RK | 308..1370 | 17..1079 | 5285 | 99.8 | Plus |
| gus-RI | 2040 | CG2944-RI | 308..1374 | 17..1079 | 5210 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 932..43 | 4450 | 100 | Minus |
| 2R | 25286936 | 2R | 5117656..5117802 | 1079..933 | 705 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:59:55 has no hits.
BS20658.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:20 Download gff for
BS20658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RE | 311..1364 | 17..1070 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:13 Download gff for
BS20658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 308..1361 | 17..1070 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:53 Download gff for
BS20658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 308..1361 | 17..1070 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:53 Download gff for
BS20658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117665..5117802 | 933..1070 | 100 | <- | Minus |
| 2R | 5120763..5121652 | 43..932 | 100 | <- | Minus |
| 2R | 5121773..5121798 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:13 Download gff for
BS20658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005170..1005307 | 933..1070 | 100 | <- | Minus |
| arm_2R | 1008268..1009157 | 43..932 | 100 | <- | Minus |
| arm_2R | 1009278..1009303 | 17..42 | 100 | | Minus |
BS20658.pep Sequence
Translation from 16 to 1071
> BS20658.pep
MHICIYMSMYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFE
RLRLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRE
LQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFH
RHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS
VGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDK
FLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRY
IGGLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNR
R*
BS20658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-PM | 279 | CG2944-PM | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PL | 279 | CG2944-PL | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PK | 279 | CG2944-PK | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PJ | 279 | CG2944-PJ | 1..279 | 73..351 | 1486 | 100 | Plus |
| gus-PI | 279 | CG2944-PI | 1..279 | 73..351 | 1486 | 100 | Plus |
