BS20682.complete Sequence
1205 bp assembled on 2011-01-11
GenBank Submission: KX805095
> BS20682.complete
GAAGTTATCAGTCGACATGGAGCTGATAAAAAAATACAAACAAGGAAAGC
TAACCACCAGCGATATTGCCCATATAAATCATATAGTAATATGTCTCATG
GTCATGATAGCAGTATTCTCCATACTATGGAACATAACGCTGATCATGAT
ATCGGGTGATCTGTACGAGGGAATAGTCAGTGCCAAACTTATCTTCCGGG
AGCGCAGCGTTGATAAAATGGATGAGTCCAGCAAGGAGATCCTTCATCGG
GATTTCATCAAAGCCACCCAGTATGCCTATGGAAGGCAGTACTCCGTGCA
GGATGTCACACCTGAATCGCTGAAGAGCGAGAGCCAAATCTTTAAGTTAC
CGCATATCTACGAATCTATCGAGAATCGACCGAAATTGGAGCGTCTCATT
GCTGAAAATAAAGTGGAGGTTATTTCTACCACGACGACTCCTCCACCGAA
GATCACTTTCAATGCTGAGGCGGATCGCCACTTTTTGAGCACAATGTCCA
TCGATGTTATGGCCACTGTCTGGGAAAGAGGACCAGGAGCTCAGTTTGTC
TACGTATTTCCCCTCATATCAGAGATCGTGGCCATTATCTGGACAGCCAT
GTGTTTGATTTACCAGACAGGCAGCAAAAAGAGCTCAGTTTTGCCGAAGC
CGTGGCGCATTGTGGTGCCCTCCATCGTTATCTTCTCGGTGATGAGTTTG
TGCAGTGTAATCTACACAATCCTGACCAATGGCCACCTTAAGCACCTCTG
TGGCCAACTGAGGGAGAATCTCACAGATCCCACTGCCATCACCTGCGGCG
ATGCCATCGCCCTGTTGCGTCCCATCATTCACGACCACAACGTATCCCAT
GATACTTATCTGGAGCTCTTCCGCTTCAGCTACTTGATCGGAATGGTACT
GTGGATAGTGGCTCTGCTGGTCATGGTGCTGCGTTATGTATTCGCCGTGG
ACTTCCAGCTGGTGGACATTGATGATATGTTCGATAGCGGACGAAATGGC
TCTGCACAAGTTCAGATTCAACCGGTATACACTGAGGTAGTGCAGCAGAG
CAGTCCACAGCACCAGACGCAGATGCGTCCGAGATCGGAAGATGACTATC
AGAGTGCCAGGTCGCACTTGAGCGATCTTGCAGTTCCACTTCTGGAGGTG
CAAAGCCAGTCCCAGATTCCGCCAACTAGCTTGGCCTAAAAGCTTTCTAG
ACCAT
BS20682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14253-RF | 1173 | CG14253-PF | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| CG14253-RA | 1173 | CG14253-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| CG14253-RD | 1173 | CG14253-PD | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14253-RF | 2286 | CG14253-RF | 665..1837 | 17..1189 | 5865 | 100 | Plus |
| CG14253-RA | 1981 | CG14253-RA | 360..1532 | 17..1189 | 5865 | 100 | Plus |
| CG14253-RD | 2361 | CG14253-RD | 740..1912 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26984705..26985257 | 637..1189 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 26983963..26984217 | 81..335 | 1275 | 100 | Plus |
| 3R | 32079331 | 3R | 26984276..26984434 | 336..494 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 26984490..26984636 | 490..636 | 720 | 99.3 | Plus |
| 3R | 32079331 | 3R | 26981688..26981751 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:00 has no hits.
BS20682.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:33:22 Download gff for
BS20682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14253-RD | 725..1895 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:14 Download gff for
BS20682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14253-RD | 740..1910 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:55 Download gff for
BS20682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14253-RD | 740..1910 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:55 Download gff for
BS20682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26981688..26981751 | 17..80 | 100 | -> | Plus |
| 3R | 26983963..26984217 | 81..335 | 100 | -> | Plus |
| 3R | 26984276..26984434 | 336..494 | 100 | -> | Plus |
| 3R | 26984495..26984636 | 495..636 | 100 | -> | Plus |
| 3R | 26984705..26985255 | 637..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:14 Download gff for
BS20682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22807410..22807473 | 17..80 | 100 | -> | Plus |
| arm_3R | 22809685..22809939 | 81..335 | 100 | -> | Plus |
| arm_3R | 22809998..22810156 | 336..494 | 100 | -> | Plus |
| arm_3R | 22810217..22810358 | 495..636 | 100 | -> | Plus |
| arm_3R | 22810427..22810977 | 637..1187 | 100 | | Plus |
BS20682.pep Sequence
Translation from 16 to 1188
> BS20682.pep
MELIKKYKQGKLTTSDIAHINHIVICLMVMIAVFSILWNITLIMISGDLY
EGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQYSVQDVTPE
SLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTTPPPKITFNA
EADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAIIWTAMCLIYQ
TGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHLKHLCGQLRE
NLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLIGMVLWIVAL
LVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEVVQQSSPQHQ
TQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*
BS20682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14253-PF | 390 | CG14253-PF | 1..390 | 1..390 | 1990 | 100 | Plus |
| CG14253-PA | 390 | CG14253-PA | 1..390 | 1..390 | 1990 | 100 | Plus |
| CG14253-PD | 390 | CG14253-PD | 1..390 | 1..390 | 1990 | 100 | Plus |
| CG14253-PE | 390 | CG14253-PE | 1..390 | 1..390 | 1990 | 100 | Plus |
| CG14253-PC | 390 | CG14253-PC | 1..390 | 1..390 | 1990 | 100 | Plus |
