BS20704.complete Sequence
1757 bp assembled on 2011-02-17
GenBank Submission: KX802433
> BS20704.complete
GAAGTTATCAGTCGACATGAATAGAACGCGAAGGATACTCGAAGTGATCG
TTATCCTTATTCTAGCGATATCGAGTTGTGATGGCAGTGGAGGAGATATC
CCCCTGCGATGCGACGAGTACGATTCCATGGGATACATGGACGTGAATGA
GGCGTTTTGCACGGTCACCGGATTCACGGTCACACACAGTCAAAATGTCG
TGATCAAGAACATACCACCCGGAAATATGGTCAAGTTCATGAAGTTTTAC
GAATCAACGCTGCTCTATATGCCCTTCCATCTATTCGAAACATTCCCATA
TCTCAAGACCCTCGATGTCTCGAATACGAATATTTTGGAGCTAACGAGAA
ATGCATTCAGTGCTGCGAGTAATCTCACCTATCTGAATCTGGCCTACAAT
AATCTGACATCTATCCAGACTTCTGTGTTTATTGGCGCCAATGTTCTGAT
GCGTTTGGATTTGTCCTACAATGAGATATCCTCGCTGAGTGTGAATGCCT
TCTGTGGCCTGCACACCATTAGCCAGATTTATCTAACGGGCAATCTGTTG
AAGGAGCTGCACAACGATATCTTCAAGGATAACGAGTACTTGGAGAAGGT
GTCCTTCGAGGGAAATCTACTGACCAGCATTCAACCGGAGGTTTTTCGCA
ATATGCGGCGCATCAAGGAGGTTAATCTATCCAATAATCGCCTGATTTTC
ATCCATCCGGACACTTTTGCGGATGCGGCAAGCTTGGAGAATCTGGTGTT
GTCCTATAATGAGTTGAAAAACTTCCAGCTGACGGAGAAGAATATTGTGC
ATCAGCTGCACTTGGATAATAATTATCTTACAAATTTGACCATAAATGCA
ACTCGATTCGTTCGCGCCAGTCACAATCAAATTTCGGAGCTCTTTCTGCA
CCAGAGTTTGCATATCGAAACATTGGATTTAAGTGCCAACAAGTTGAGTA
GCATATCGAATATCACCAATATCACACATATGCTCTACTTGGATGTATCG
GATAATCCAATTGGTCCGCTTAATATCAGCACCTTTTCGCAACTTAAGAG
ACTGAGGGGACTAAATTTGCGAGGAACTGGAATTAGAGAGCTTAAATTTG
GAATGTTTTCGAAGCAGAAGTACTTGGAGGAACTGGATCTTTCGTTTAAC
AACCTGACCATTCTCAATTTGGATATGTTTGTGCCCTATCTGACTAATCT
GAAGAAGTTCCTCATCGACGGCAATGGGCTGACTGAGCTGCAGGGAAATC
GCACGTTTTCCGAAGCTTTTCCACAACTTCAGAAATTGGGAGTATCGAGG
AACCGCTTCAACTGCTCCTATCTACATCATCTACTCATCCCACCATCGCT
ACCCGAGTCCGTAGTGCTCAATATTGAACCGGACACCAATCTGGATGAGA
CCCCACACATTCGTGACGTATCCTGCATCAGTCAATCCCAGGAGGTCGTT
AATGCCTCCTTCACCGCCGAGGAATCCAAGCTAGAATCGCAGATTCAAAT
GCTTTCGAAACAGTTGGATATTGTAGGCTCGCATTCGAAGAATCTGGAAC
TTCACCTGGCCTTTATGCAGATCTTTGCGTACGTTATGGGCGGCCTGGTC
CTGGTGGGTGTGGTGTCACTGATAACCCTTCGATATCTGAAGAATCAACG
ATCGGGTCGATATGATCGCAGCAGCATTGTCTTCCGCTCCAATGCCACAA
TGGAAGCTAATCTCACCCTGGGCAGTGAAGATCTTCAGTAGAAGCTTTCT
AGACCAT
BS20704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4950-RB | 1725 | CG4950-PB | 1..1725 | 17..1741 | 8625 | 100 | Plus |
| CG4950-RC | 1725 | CG4950-PC | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4950-RB | 1796 | CG4950-RB | 16..1740 | 17..1741 | 8625 | 100 | Plus |
| CG4950-RC | 2360 | CG4950-RC | 16..1740 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16266417..16268141 | 1741..17 | 8625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:01:03 has no hits.
BS20704.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:30 Download gff for
BS20704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4950-RB | 16..1740 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:08 Download gff for
BS20704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4950-RC | 16..1740 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:48 Download gff for
BS20704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4950-RC | 16..1740 | 17..1741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:48 Download gff for
BS20704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16266417..16268141 | 17..1741 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:08 Download gff for
BS20704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16259517..16261241 | 17..1741 | 100 | | Minus |
BS20704.pep Sequence
Translation from 16 to 1740
> BS20704.pep
MNRTRRILEVIVILILAISSCDGSGGDIPLRCDEYDSMGYMDVNEAFCTV
TGFTVTHSQNVVIKNIPPGNMVKFMKFYESTLLYMPFHLFETFPYLKTLD
VSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFIGANVLMRLDLS
YNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGN
LLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNEL
KNFQLTEKNIVHQLHLDNNYLTNLTINATRFVRASHNQISELFLHQSLHI
ETLDLSANKLSSISNITNITHMLYLDVSDNPIGPLNISTFSQLKRLRGLN
LRGTGIRELKFGMFSKQKYLEELDLSFNNLTILNLDMFVPYLTNLKKFLI
DGNGLTELQGNRTFSEAFPQLQKLGVSRNRFNCSYLHHLLIPPSLPESVV
LNIEPDTNLDETPHIRDVSCISQSQEVVNASFTAEESKLESQIQMLSKQL
DIVGSHSKNLELHLAFMQIFAYVMGGLVLVGVVSLITLRYLKNQRSGRYD
RSSIVFRSNATMEANLTLGSEDLQ*
BS20704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4950-PB | 574 | CG4950-PB | 1..574 | 1..574 | 2913 | 100 | Plus |
| CG4950-PC | 574 | CG4950-PC | 1..574 | 1..574 | 2913 | 100 | Plus |
| alrm-PA | 471 | CG11910-PA | 47..362 | 51..388 | 342 | 29.4 | Plus |
| conv-PA | 1092 | CG8561-PA | 385..856 | 90..541 | 315 | 25.3 | Plus |
| conv-PB | 1092 | CG8561-PB | 385..856 | 90..541 | 315 | 25.3 | Plus |
| conv-PA | 1092 | CG8561-PA | 191..548 | 63..408 | 267 | 24.4 | Plus |
| conv-PA | 1092 | CG8561-PA | 416..790 | 51..432 | 260 | 26.1 | Plus |
| conv-PA | 1092 | CG8561-PA | 176..519 | 96..429 | 259 | 26.5 | Plus |
| conv-PA | 1092 | CG8561-PA | 604..887 | 96..405 | 224 | 27 | Plus |
| conv-PA | 1092 | CG8561-PA | 125..463 | 96..424 | 192 | 22.6 | Plus |
