Clone BS20709 Report

Search the DGRC for BS20709

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptdUTPase-RB
Protein status:BS20709.pep: full length peptide match
Sequenced Size:557

Clone Sequence Records

BS20709.complete Sequence

557 bp assembled on 2011-01-18

GenBank Submission: KX802457

> BS20709.complete
GAAGTTATCAGTCGACATGAAGATCGACACGTGCGTCCTGCGATTCGCCA
AACTCACCGAGAATGCTTTGGAGCCGGTGAGGGGATCCGCCAAAGCGGCG
GGAGTTGACCTGCGCAGCGCCTACGACGTTGTGGTGCCGGCACGCGGAAA
GGCCATTGTCAAGACCGATCTGCAAGTGCAGGTTCCGGAGGGCTCCTACG
GACGCGTAGCCCCACGATCCGGGCTGGCGGTGAAGAACTTCATTGATGTG
GGCGCCGGTGTGGTGGACGAGGATTATCGCGGCAATCTCGGCGTCGTCCT
GTTCAATCACTCAGATGTTGATTTCGAGGTGAAGCATGGCGACCGCATCG
CCCAGTTCATTTGCGAGCGTATCTTCTATCCGCAACTGGTGATGGTGGAC
AAACTGGAGGACACCGAGCGCGGCGAGGCAGGATTCGGTTCCACCGGAGT
CAAGGATCTGCCGGCAGCCAAGGCGCAGAACGGCAACGGAGAAAAGGCTG
CCGAACCGGAGGGAGCTGCTCCGGCTCCTGTTGCTACGTAAAAGCTTTCT
AGACCAT

BS20709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 567 CG4584-PA 43..567 17..541 2625 100 Plus
dUTPase-RB 525 CG4584-PB 1..525 17..541 2625 100 Plus
dUTPase-RD 525 CG4584-PD 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 172..697 17..542 2630 100 Plus
dUTPase-RB 732 CG4584-RB 80..605 17..542 2630 100 Plus
dUTPase-RD 750 CG4584-RD 98..623 17..542 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011483..11012008 17..542 2630 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:05:55 has no hits.

BS20709.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:25 Download gff for BS20709.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 149..671 17..539 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:46 Download gff for BS20709.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RD 117..639 17..539 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:14 Download gff for BS20709.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RD 98..620 17..539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:14 Download gff for BS20709.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011483..11012005 17..539 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:46 Download gff for BS20709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011483..11012005 17..539 100   Plus

BS20709.pep Sequence

Translation from 16 to 540

> BS20709.pep
MKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKT
DLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSD
VDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGVKDLPA
AKAQNGNGEKAAEPEGAAPAPVAT*

BS20709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PB 174 CG4584-PB 1..174 1..174 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 1..174 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 1..174 887 100 Plus
dUTPase-PA 188 CG4584-PA 15..188 1..174 887 100 Plus