BS20711.complete Sequence
4025 bp assembled on 2011-02-17
GenBank Submission: KX805375
> BS20711.complete
GAAGTTATCAGTCGACATGGGGGAAAGCGATGCCGAGAGCGATTCGAGCA
GCAATTCCAGCAGCAGCGACACTTCCAGTGGCAGCGACAGCGACGCCAGG
AGCGAGTCCTCGTCCTCCGAAAGCAGCGGGCGCGAGGAAGAGGAAGCAAA
GCAGGAGGAATCCGCCAAAGATGCCAAGAAAACTGACGATACGGATAGGG
GGGAGAAGCGTGCCAAGGAGAGGGATGCTGGACAGGATGAGCAGCCCACT
GAGCAGAAGAAAACTCCTGCGGCTGAGCCTCGTTCGGAGCGCCAGCACAT
TTCCCATTCTGCTGGCGTGGAAAAGCAGCAAGAAGAAGCAGTAGCAGCTG
CGGAGGCGGAAAGCGAGAAATTAAATGAAGCGAAAAAAGTTGAAACACCT
GTCCAGCGGAAAGAGGAAGCAGAAGCCTCAAGTGTGACGAAAGAGCTGAA
CAGCCCGAAGGCCCAAGAGGAAAACGCTGCACGGGAATTAGAAGAGCGGA
GGAAGGATGAAGAGCAGCCAGTGACCACCAATGGAAGTAGCAAGGAATCG
CCGGTGGAAGCAGCAGCTGAAACAGTGAAACCTCCCACTGCGGACCACAT
CGAAGAGGGCGAGATAACCGACAAAGACGAAGATGACCTACCGACTAAAG
AGGAAAAGAAAGCTGTCGCATCTAAGAGTCCACCCAAAGAAACCCAACGA
AAACAAAGCCGCAGCCCGGATGGCAAACGACGACGCCCACGCTCATCCAG
CAGGAGTCCATCACCCAGCAGCCGTCGTCGTCGTCGCTCGAGAAGCAAAG
GCAGCAGGACCCGGAGTCGCAGTAAAAGTCCAATCCGCCGCAGATCCAAT
TCTTTGGAGAGAAGACGCGTTGAGCGACAGAGACGTCATGAGGAGCGAGA
TAAACGCGATGAAGAGCGAGCCAAGGAGCGAGAAAAGCGCCATCAAAAGG
GCGAACCAACCAGCAGCAGGCGTAGAGATGATTCGAGGGAAAAGAAGAGG
TCGCCAGAACGCAAAAGAGATCGATCCTCCTCCACTCCGAAATCCAAATC
CTCAAAGACCCCACGCCACACCGAAACCACCGAAACTAATGCAGACAATG
AAACCGTAACCGAACCGGCAGCCAAAATAACTGAGCGCCAACGAAAGACC
GTCGATGTGCTGACATCTCGGACTGGAGGAGCCTATATTCCGCCGGCGAA
GCTGCGCATGATGCAGTCACAGATCACGGACAAATCATCCGCTGCCTATC
AGAGAATTGCTTGGGAGGCTCTCAAGAAATCGATCCATGGTTACATAAAC
AAAGTGAATGTAACAAATATAGCCATCATCACCAGAGAGCTTCTAAGAGA
GAATATCGTGAGGGGAAGGGGCTTACTAAGCAGGAGCATCATCCAAGCCC
AGGCTGCTTCGCCCACATTCACCCATGTATACGCCGCTCTGGTGAGCATT
ATAAATTCAAAGTTTCCGAACATAGGAGAGCTCCTCCTCAAACGTCTGGT
CATCCAATTTCGTAGGGCGTTCCGACGCAATGATAAGATGGTTTGCATGT
CGGCCACTCGATTCATTGGCCATTTGGTTAACCAGAGGGTGGCACATGAG
ATTCTGGCACTAGAAATCCTTACCCTGCTGGTGGAAACGCCAACGGACGA
TTCTGTAGAGGTAGCCATCGCTTTTCTGAAAGAGTGTGGTATGAAACTGA
CTGAGGTTTCGTCTAAAGGCATTGGGGCCATCTTCGAGATGCTGAGAAAC
ATTCTGCACGAGGGAAAGTTGGACAAGCGTGTACAGTACATGATTGAGGT
GCTGTTTCAGATTCGAAAGGATGGCTTTAAGGATCATCAGGCTGTTGTTC
CGGAACTGGAGCTCGTTGAGGAGGACGATCAGTTCACACATCTGATGATG
CTGGATGAAGCCACCGAAACGGAAGATATACTAAATGTTTTTAAATTTGA
CGACAATTATGCCGAAAATGAGGACAAATACAAAGGCCTAAGTCGTGAGA
TCCTGGGAAGCGACGATGGCAGTAGTTCAGGCTCGGGCTCCGGATCAGAT
TCGGATAGTGATTCGGATGGAGAATCCGGATCCGATGCGGAAAAGAAAGC
CGAGGCTGGCGACATCATTGACAGCACTGAAACCAATCTGATTGCCCTGC
GACGCACAATTTACTTAACAATCAACTCCAGTTTGGATTATGAGGAGTGT
GCTCATAAACTGATGAAAATGCAACTGAAACCCGGACAAGAAATCGAGCT
CTGTCACATGTTTCTCGATTGCTGTGCGGAACAGAGAACATACGAGAAGT
TCTACGGACTGCTGGCGCAGCGGTTCTGCAACATCAATAAGATCTACATA
CCGCCCTTCGAGGAGATTTTTAAGGACACCTATCAAACCACCCACAGATT
GGACACAAATCGTTTGCGAAACGTCAGCAAGTTCTTCGCCCATCTCCTGT
TTACGGACGCCATTAGTTGGGATGTGCTGGAGTGCATCCAACTGAACGAG
GATGATACCACGTCATCGAGCCGCATTTTCATAAAAATCCTGTTCCAGGA
GCTAGCTGAGTATATGGGACTGGGCAAACTGAATGCCAAGCTGAAGGATG
ATGTTTTGGTAGAGAGCATAGCTGGTTTGTTTCCCAAGGATAATCCACGG
AATACCCGCTTCTCCATTAACTTTTTCACCTCGATTGGTTTGGGTGGTCT
CACCGACGATTTGAGAAGATTCCTAAAAAACGCCCCCAAATCTGTGCCCG
CAATAAATGCTGAAATTCTGGCCAATGCCGGGGGGAATCCTTTCAGAGAT
GGCTCTGCACCCGCTGGAAACACCAAGGTGGCCCCATCTTCGTCCTCCTC
GTCATCGTCGTCTTCGGACACGGACAGCGAAGACTCCAGTGAAGAGGACA
GCAGTTCCGACTCTTCTAGTGAATCTTCAAGCTCCGATTCTAGCTCGGAA
CCCAAAAAGAAACGCAAACGCAAGGACAAGGATAAAAAGAAATCTAAGAA
AGCGACTAAAGAGAAGTCGAAAAAGACCAAGAACAAAAAGAAGAAGAAGA
AGGCGGAAAAGGAACAAGAAAAAGAAAAAGAGAAGCAAAGAAAGAGCAAA
AAGGAAAAGGAGAAGGATAAAAAGCGTAAGAAGGAGGAAAAGAAGGCTGC
CAAGAAGAAATCAAAGCACAGAAGAAAAAGTCAAGAGAGCTCGGATTCCA
GTGGCAGCGAAGACAGCGATAAGTCCACCTCCGAATCATCCGACTCATCG
AATTCTTCCAGCGATGAAAGTGACGCTGAGCCTCAGGCGAAGATCAAGCG
CCAGGAGCATGTCGAAAAAAATAAGTTCCGAGGAAGGACCCAAGATAGTG
ATGAGTTTAATTTGGAAGGTCCTGGATCCAAAAATCGCTTTCAGCCGAAT
GGAAATGGCCAGAGGCGCAGAGATAACTCAACTGGCAGAGAACGAAACCG
GGAGAATTCTTCGTACGACAGAGAAAGAAACAGGGGAAATTCTTCGTACG
ATAGAGAACGAAAGCGGGGGAATTCTTCATACGACAGAGAAAGAAACCGA
GAGAGTTCATACGATAAAGAACGGAAGAACCGAAATGCAGTTGCCCACGA
TAGACAACGAAAACGGGATCGATCACGATCTTATGAAAGACCAACAATAA
GAGAGAACTCCGCTCCTCGCGAAAAGCGGATGGAGAGTAGTCGCAGTGAA
AAAGACAGTCGTCGTGGTGACCGTTCCTCCAGAAACGAGAGATCAGATCG
TGGAGAGAGATCGGACCGCGGAGAAAGATCAGACCGTGGAGAGAGATCAG
ACCGTGGAGAGAGATCAGATCGTGGAGAGAGATCAGATCGTGGAGAGAGG
TCAGATCGCGAAAAGGAACGCAGTCGTGCCAAGGAGCGGGAACGGGATAG
GGATCGTGATCTGAAGGGACAACGGGAGCGTAAAAGAGAGCGTGACGATG
GATCCCGTGATCGTTCGCGAAGGGAGCGCAGCTCACGCCGTTCCAAGGGA
CGCAGCTGAAAGCTTTCTAGACCAT
BS20711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncm-RA | 3993 | CG12750-PA | 1..3993 | 17..4009 | 19965 | 100 | Plus |
| ncm-RA | 3993 | CG12750-PA | 3420..3497 | 3469..3546 | 210 | 84.6 | Plus |
| ncm-RA | 3993 | CG12750-PA | 3453..3530 | 3436..3513 | 210 | 84.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncm-RA | 4231 | CG12750-RA | 104..4097 | 17..4010 | 19970 | 100 | Plus |
| ncm-RA | 4231 | CG12750-RA | 3523..3600 | 3469..3546 | 210 | 84.6 | Plus |
| ncm-RA | 4231 | CG12750-RA | 3556..3633 | 3436..3513 | 210 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18444641..18446716 | 4010..1935 | 10380 | 100 | Minus |
| 2L | 23513712 | 2L | 18446781..18448092 | 1934..623 | 6560 | 100 | Minus |
| 2L | 23513712 | 2L | 18448249..18448854 | 622..17 | 3030 | 100 | Minus |
| 2L | 23513712 | 2L | 18445105..18445182 | 3513..3436 | 210 | 84.6 | Minus |
| 2L | 23513712 | 2L | 18445138..18445215 | 3546..3469 | 210 | 84.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:36 has no hits.
BS20711.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:40 Download gff for
BS20711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncm-RA | 143..4134 | 17..4008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:02 Download gff for
BS20711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncm-RA | 104..4095 | 17..4008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:39 Download gff for
BS20711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncm-RA | 104..4095 | 17..4008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:39 Download gff for
BS20711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18444643..18446716 | 1935..4008 | 100 | <- | Minus |
| 2L | 18446781..18448092 | 623..1934 | 100 | <- | Minus |
| 2L | 18448249..18448854 | 17..622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:02 Download gff for
BS20711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18444643..18446716 | 1935..4008 | 100 | <- | Minus |
| arm_2L | 18446781..18448092 | 623..1934 | 100 | <- | Minus |
| arm_2L | 18448249..18448854 | 17..622 | 100 | | Minus |
BS20711.pep Sequence
Translation from 16 to 4008
> BS20711.pep
MGESDAESDSSSNSSSSDTSSGSDSDARSESSSSESSGREEEEAKQEESA
KDAKKTDDTDRGEKRAKERDAGQDEQPTEQKKTPAAEPRSERQHISHSAG
VEKQQEEAVAAAEAESEKLNEAKKVETPVQRKEEAEASSVTKELNSPKAQ
EENAARELEERRKDEEQPVTTNGSSKESPVEAAAETVKPPTADHIEEGEI
TDKDEDDLPTKEEKKAVASKSPPKETQRKQSRSPDGKRRRPRSSSRSPSP
SSRRRRRSRSKGSRTRSRSKSPIRRRSNSLERRRVERQRRHEERDKRDEE
RAKEREKRHQKGEPTSSRRRDDSREKKRSPERKRDRSSSTPKSKSSKTPR
HTETTETNADNETVTEPAAKITERQRKTVDVLTSRTGGAYIPPAKLRMMQ
SQITDKSSAAYQRIAWEALKKSIHGYINKVNVTNIAIITRELLRENIVRG
RGLLSRSIIQAQAASPTFTHVYAALVSIINSKFPNIGELLLKRLVIQFRR
AFRRNDKMVCMSATRFIGHLVNQRVAHEILALEILTLLVETPTDDSVEVA
IAFLKECGMKLTEVSSKGIGAIFEMLRNILHEGKLDKRVQYMIEVLFQIR
KDGFKDHQAVVPELELVEEDDQFTHLMMLDEATETEDILNVFKFDDNYAE
NEDKYKGLSREILGSDDGSSSGSGSGSDSDSDSDGESGSDAEKKAEAGDI
IDSTETNLIALRRTIYLTINSSLDYEECAHKLMKMQLKPGQEIELCHMFL
DCCAEQRTYEKFYGLLAQRFCNINKIYIPPFEEIFKDTYQTTHRLDTNRL
RNVSKFFAHLLFTDAISWDVLECIQLNEDDTTSSSRIFIKILFQELAEYM
GLGKLNAKLKDDVLVESIAGLFPKDNPRNTRFSINFFTSIGLGGLTDDLR
RFLKNAPKSVPAINAEILANAGGNPFRDGSAPAGNTKVAPSSSSSSSSSS
DTDSEDSSEEDSSSDSSSESSSSDSSSEPKKKRKRKDKDKKKSKKATKEK
SKKTKNKKKKKKAEKEQEKEKEKQRKSKKEKEKDKKRKKEEKKAAKKKSK
HRRKSQESSDSSGSEDSDKSTSESSDSSNSSSDESDAEPQAKIKRQEHVE
KNKFRGRTQDSDEFNLEGPGSKNRFQPNGNGQRRRDNSTGRERNRENSSY
DRERNRGNSSYDRERKRGNSSYDRERNRESSYDKERKNRNAVAHDRQRKR
DRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSD
RGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERERDRDRDLK
GQRERKRERDDGSRDRSRRERSSRRSKGRS*
BS20711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncm-PA | 1330 | CG12750-PA | 1..1330 | 1..1330 | 6706 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 339..711 | 953..1329 | 411 | 25.8 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 145..650 | 893..1329 | 402 | 27.6 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 145..650 | 893..1329 | 402 | 27.6 | Plus |
| CG7971-PC | 1107 | CG7971-PC | 145..650 | 893..1329 | 402 | 27.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 304..699 | 955..1329 | 401 | 24.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 285..661 | 953..1327 | 397 | 25.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 375..733 | 959..1327 | 389 | 23.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 264..633 | 962..1329 | 371 | 24.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 403..742 | 953..1324 | 345 | 22 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 142..530 | 926..1327 | 341 | 28.1 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 142..530 | 926..1327 | 341 | 28.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 349..714 | 3..377 | 314 | 23.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 332..678 | 28..377 | 312 | 26.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 289..642 | 27..377 | 307 | 24.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 375..726 | 24..377 | 305 | 23.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 314..660 | 28..377 | 302 | 24.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 433..744 | 955..1283 | 300 | 20.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 381..746 | 24..379 | 294 | 24.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 394..741 | 3..362 | 291 | 22.8 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 314..675 | 936..1300 | 287 | 23.9 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 314..675 | 936..1300 | 287 | 23.9 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 210..554 | 9..376 | 276 | 24.3 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 210..554 | 9..376 | 276 | 24.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 264..618 | 23..377 | 274 | 24.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 405..767 | 3..362 | 267 | 21.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..575 | 48..377 | 249 | 20.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 478..744 | 953..1241 | 233 | 17.2 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 104..473 | 961..1330 | 233 | 24.4 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 104..473 | 961..1330 | 233 | 24.4 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 146..546 | 21..376 | 222 | 25.6 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 146..546 | 21..376 | 222 | 25.6 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 88..452 | 971..1327 | 216 | 22.4 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 101..450 | 2..350 | 216 | 22.5 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 88..452 | 971..1327 | 216 | 22.4 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 101..450 | 2..350 | 216 | 22.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 491..749 | 959..1241 | 210 | 17.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 519..807 | 953..1243 | 200 | 15.7 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 318..724 | 11..376 | 196 | 19.7 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 525..889 | 945..1325 | 196 | 19.2 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 318..724 | 11..376 | 196 | 19.7 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 525..889 | 945..1325 | 196 | 19.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 595..813 | 955..1166 | 189 | 20.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 261..513 | 109..377 | 188 | 21.8 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 441..814 | 943..1330 | 188 | 20.8 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 441..814 | 943..1330 | 188 | 20.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 636..811 | 953..1122 | 171 | 22.8 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 523..947 | 5..436 | 167 | 20.6 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 523..947 | 5..436 | 167 | 20.6 | Plus |
