BS20712.complete Sequence
2477 bp assembled on 2012-04-25
GenBank Submission: KX804518
> BS20712.complete
GAAGTTATCAGTCGACATGGCCACTGAGGCGGAGGGCGAGGAATTCGATG
TGGATCCCATGGACGAGGACGATGAGGATCAGACCTACGACCGAGAGACC
GAGGAGTTCTATAGCAATATACAGGATGCCGCAGGCACCGGATCATCGAG
TCGCAGCAAGAGATCGTCGCTCTTCTCCAGATCGGATAGTTCCGCCACCA
CCACCTCGTCGAGCGGCGGTGGAACCTTTACTGGCGGCAAGCGCAGATCG
GCTGCCTCTATTCTGTCCTCATCTATGTGCTCCGATCTAATGACCAGCGA
TCGCCGAAGCTCCACGGCCACGGAATACAGCGTCAAGTCGGTGACCACCG
GGAATACCTCGCAACGCAGGTCGAGCGGACGGATTCGTAGATATGTCTCA
CGGATGACAATCGCCGGAGCCAGGAGACGCACCACGGGCAGTTTCGATGT
AGAAAATGGCCAGGGCGCTAGATCACCGCTCGAGGGCGGCTCACCCAGCG
CCGGTTTGGTACTACAGAATTTGCCGCAGCGTCGCGAATCGTTTCTATAT
CGCTCCGATTCGGACTTTGAGATGTCACCCAAGTCCATGTCCCGAAACTC
AAGCATCGCTAGCGAAAGCCATGGCGAGGATCTCATTGTGACGCCTTTCG
CCCAAATTTTAGCCAGCTTACGTTCAGTGCGCAACAATTTATTAAGTCTG
ACAAATGTTCCAGCATCAAACAAATCCAGGCGGCCCAACCAATCGTCGTC
GGCCTCGCGATCAGGAAATCCACCAGGAGCCCCGCTATCCCAAGGCGAGG
AGGCATACACCCGCCTGGCCACCGACACAATCGAGGAGCTGGACTGGTGC
CTCGACCAGCTGGAGACCATCCAGACCCATCGCAGCGTCTCCGACATGGC
GTCGCTTAAGTTCAAACGCATGCTCAACAAGGAGCTGTCGCACTTTAGCG
AGTCCAGCAGATCGGGAAATCAGATTTCCGAATATATATGTTCCACATTT
TTGGACAAGCAACAGGAGTTCGACTTGCCATCGCTGCGCGTGGAGGATAA
TCCCGAGCTGGTCGCCGCCAATGCAGCCGCTGGTCAACAGTCCGCTGGAC
AGTATGCACGCTCCCGATCGCCGCGCGGTCCGCCCATGTCGCAGATCAGC
GGCGTGAAGAGACCGCTGTCGCATACGAATAGCTTTACCGGCGAACGTTT
GCCCACCTTCGGTGTGGAGACACCCAGGGAGAATGAGCTGGGCACGCTGC
TCGGCGAACTGGACACCTGGGGTATTCAGATATTCAGCATCGGCGAGTTC
AGTGTCAATCGACCGCTCACCTGTGTGGCATACACCATATTTCAGAGTAG
AGAATTACTGACCAGTCTTATGATACCACCGAAAACTTTTCTTAACTTTA
TGTCTACTCTGGAGGACCACTACGTCAAAGACAATCCGTTTCACAATTCG
CTGCATGCCGCCGATGTGACACAAAGCACTAATGTGCTACTCAATACACC
GGCGCTGGAGGGCGTATTCACGCCGCTCGAAGTGGGCGGGGCGCTGTTCG
CCGCTTGCATACACGATGTTGATCATCCCGGCTTAACCAATCAGTTCTTG
GTTAACTCAAGTTCCGAACTAGCATTAATGTACAATGACGAATCTGTTTT
GGAAAATCATCATTTAGCTGTTGCCTTTAAATTATTACAAAATCAAGGAT
GTGATATATTCTGTAATATGCAAAAGAAACAACGCCAAACATTGAGGAAA
ATGGTTATTGATATTGTGCTGTCCACGGACATGTCCAAGCACATGAGTCT
GCTGGCCGACCTAAAGACAATGGTGGAAACCAAAAAGGTGGCCGGCTCCG
GAGTACTGCTGCTGGACAACTACACCGATCGCATACAGGTGCTTGAGAAT
CTGGTGCACTGCGCCGATCTGAGCAATCCCACCAAGCCGCTGCCGCTTTA
CAAGCGCTGGGTAGCCCTGCTCATGGAGGAGTTCTTCCTGCAGGGCGATA
AGGAACGCGAATCGGGCATGGACATTAGTCCCATGTGCGATCGCCATAAT
GCCACCATTGAGAAGTCGCAGGTGGGCTTCATCGACTACATCGTCCACCC
GCTATGGGAGACCTGGGCGGACCTGGTGCATCCGGATGCCCAGGATATAC
TCGACACGCTTGAAGAGAACAGAGACTACTACCAGAGCATGATACCGCCT
TCGCCGCCGCCATCGGGCGTCGATGAGAATCCGCAGGAGGACAGGATACG
CTTTCAAGTAACCCTTGAGGAATCCGATCAGGAGAACCTCGCCGAACTGG
AGGAGGGCGACGAGAGTGGTGGCGAGAGCACCACCACAGGCACAACCGGA
ACCACCGCTGCATCCGCGCTAAGCGGAGCTGGTGGCGGTGGCGGTGGAGG
CGGGGGAATGGCACCCAGAACGGGTGGCTGCCAAAACCAACCGCAACACG
GTGGAATGTGAAAGCTTTCTAGACCAT
BS20712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RG | 2445 | CG32498-PG | 1..2445 | 17..2461 | 12225 | 100 | Plus |
| dnc-RN | 2952 | CG32498-PN | 508..2952 | 17..2461 | 12225 | 100 | Plus |
| dnc-RC | 3174 | CG32498-PC | 1154..3174 | 441..2461 | 10105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RG | 2604 | CG32498-RG | 6..2450 | 17..2461 | 12225 | 100 | Plus |
| dnc-RN | 11128 | CG32498-RN | 4090..6534 | 17..2461 | 12225 | 100 | Plus |
| dnc-RC | 3792 | CG32498-RC | 1618..3638 | 441..2461 | 10105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3314184..3314608 | 17..441 | 2125 | 100 | Plus |
| X | 23542271 | X | 3338446..3338818 | 1887..2259 | 1865 | 100 | Plus |
| X | 23542271 | X | 3337241..3337582 | 1004..1345 | 1710 | 100 | Plus |
| X | 23542271 | X | 3337686..3337955 | 1343..1612 | 1350 | 100 | Plus |
| X | 23542271 | X | 3338970..3339173 | 2258..2461 | 1020 | 100 | Plus |
| X | 23542271 | X | 3334145..3334331 | 724..910 | 935 | 100 | Plus |
| X | 23542271 | X | 3321038..3321217 | 439..618 | 900 | 100 | Plus |
| X | 23542271 | X | 3338215..3338380 | 1726..1891 | 830 | 100 | Plus |
| X | 23542271 | X | 3338026..3338141 | 1611..1726 | 580 | 100 | Plus |
| X | 23542271 | X | 3332440..3332546 | 617..723 | 535 | 100 | Plus |
| X | 23542271 | X | 3334553..3334648 | 909..1004 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:04:05 has no hits.
BS20712.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:15 Download gff for
BS20712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RG | 6..2449 | 17..2460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:55 Download gff for
BS20712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RN | 4090..6533 | 17..2460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:27 Download gff for
BS20712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RN | 4090..6533 | 17..2460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:27 Download gff for
BS20712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3338970..3339172 | 2258..2460 | 100 | | Plus |
| X | 3314184..3314608 | 17..441 | 100 | -> | Plus |
| X | 3321041..3321217 | 442..618 | 100 | -> | Plus |
| X | 3332442..3332546 | 619..723 | 100 | -> | Plus |
| X | 3334145..3334331 | 724..910 | 100 | -> | Plus |
| X | 3334555..3334648 | 911..1004 | 100 | -> | Plus |
| X | 3337242..3337582 | 1005..1345 | 100 | -> | Plus |
| X | 3337689..3337953 | 1346..1610 | 100 | -> | Plus |
| X | 3338026..3338140 | 1611..1725 | 100 | -> | Plus |
| X | 3338215..3338377 | 1726..1888 | 100 | -> | Plus |
| X | 3338448..3338816 | 1889..2257 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:55 Download gff for
BS20712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3232248..3232410 | 1726..1888 | 100 | -> | Plus |
| arm_X | 3231722..3231986 | 1346..1610 | 100 | -> | Plus |
| arm_X | 3231275..3231615 | 1005..1345 | 100 | -> | Plus |
| arm_X | 3208217..3208641 | 17..441 | 100 | -> | Plus |
| arm_X | 3215074..3215250 | 442..618 | 100 | -> | Plus |
| arm_X | 3226475..3226579 | 619..723 | 100 | -> | Plus |
| arm_X | 3228178..3228364 | 724..910 | 100 | -> | Plus |
| arm_X | 3228588..3228681 | 911..1004 | 100 | -> | Plus |
| arm_X | 3232059..3232173 | 1611..1725 | 100 | -> | Plus |
| arm_X | 3232481..3232849 | 1889..2257 | 100 | -> | Plus |
| arm_X | 3233003..3233205 | 2258..2460 | 100 | | Plus |
BS20712.pep Sequence
Translation from 16 to 2460
> BS20712.pep
MATEAEGEEFDVDPMDEDDEDQTYDRETEEFYSNIQDAAGTGSSSRSKRS
SLFSRSDSSATTTSSSGGGTFTGGKRRSAASILSSSMCSDLMTSDRRSST
ATEYSVKSVTTGNTSQRRSSGRIRRYVSRMTIAGARRRTTGSFDVENGQG
ARSPLEGGSPSAGLVLQNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASE
SHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSG
NPPGAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFK
RMLNKELSHFSESSRSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVA
ANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGERLPTFGV
ETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTS
LMIPPKTFLNFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGV
FTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHL
AVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLK
TMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVA
LLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETW
ADLVHPDAQDILDTLEENRDYYQSMIPPSPPPSGVDENPQEDRIRFQVTL
EESDQENLAELEEGDESGGESTTTGTTGTTAASALSGAGGGGGGGGGMAP
RTGGCQNQPQHGGM*
BS20712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-PG | 814 | CG32498-PG | 1..814 | 1..814 | 4187 | 100 | Plus |
| dnc-PN | 983 | CG32498-PN | 170..983 | 1..814 | 4187 | 100 | Plus |
| dnc-PS | 1209 | CG32498-PS | 421..1209 | 39..814 | 3510 | 88.3 | Plus |
| dnc-PB | 1209 | CG32498-PB | 421..1209 | 39..814 | 3510 | 88.3 | Plus |
| dnc-PC | 1057 | CG32498-PC | 278..1057 | 30..814 | 3494 | 88.5 | Plus |
