BS20714.complete Sequence
1196 bp assembled on 2011-01-18
GenBank Submission: KX801494
> BS20714.complete
GAAGTTATCAGTCGACATGCTGCTGCAGCGGAACAAATTAGGCAGCGTAC
GGCCACCAAAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCGGAC
ATTGTCATCATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGC
CGAGCGTATGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCA
ATAGGGAGACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATC
TACATCATCCAAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCT
TCTGATTATGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGG
GAGTGATTCCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGC
GGCTGCATTGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCT
GACGCACATCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCT
TTGACATACCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATAT
ATTCAAGAGAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAA
TCCGGGCGTGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTG
GCCTGGCCGTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTC
GACGGTCGGTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGC
CCCAACCAGCAGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTGTTC
CGGAGCACATTGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGATGTC
AGTGGACGCATCGCCATCATGGTGGATGACCTGATCGACGATGTGCAGGC
CTTCGTGGCCGCCGCTGAGATGCTGAAGGAGAACGGTGCCTGCAAGATAT
ACGTGCTGGCCACGCATGGTCTGCTTAGCTCAGATGCACCGCGTCAGCTG
GACGAGTCGCCCATCGATGAGATCGTTGTAACCAATACCATTCCACACGA
GATCCAAAAGCTGCAGTGCCATAAGATCAAGACGATCGACATCTCCATTC
TGATCGCTGAGGCCATTCGCCGCATTCACAACAAGGAGTCCATGTCCTAT
CTGTTCCGCAACGTAACGCTGGAGGACTAGAAGCTTTCTAGACCAT
BS20714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1164 | CG2246-PG | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| CG2246-RB | 1164 | CG2246-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| CG2246-RJ | 1158 | CG2246-PJ | 15..1158 | 37..1180 | 5720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1584 | CG2246-RG | 263..1433 | 10..1180 | 5840 | 99.9 | Plus |
| CG2246-RB | 1616 | CG2246-RB | 155..1325 | 10..1180 | 5840 | 99.9 | Plus |
| CG2246-RK | 1508 | CG2246-RK | 73..1217 | 36..1180 | 5725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30595040..30595328 | 562..274 | 1445 | 100 | Minus |
| 3R | 32079331 | 3R | 30595389..30595630 | 274..33 | 1195 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30594818..30594984 | 729..563 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 30593262..30593422 | 1180..1020 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 30593489..30593636 | 1021..874 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30593704..30593851 | 875..728 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:06:37 has no hits.
BS20714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:29 Download gff for
BS20714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 129..1292 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:01 Download gff for
BS20714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 162..1325 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:31 Download gff for
BS20714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 162..1325 | 17..1180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:31 Download gff for
BS20714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30595390..30595626 | 37..273 | 100 | <- | Minus |
| 3R | 30595040..30595328 | 274..562 | 100 | <- | Minus |
| 3R | 30601201..30601220 | 17..36 | 100 | | Minus |
| 3R | 30593262..30593420 | 1022..1180 | 100 | <- | Minus |
| 3R | 30593489..30593635 | 875..1021 | 100 | <- | Minus |
| 3R | 30593705..30593849 | 730..874 | 100 | <- | Minus |
| 3R | 30594818..30594984 | 563..729 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:01 Download gff for
BS20714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26419211..26419357 | 875..1021 | 100 | <- | Minus |
| arm_3R | 26420540..26420706 | 563..729 | 100 | <- | Minus |
| arm_3R | 26418984..26419142 | 1022..1180 | 100 | <- | Minus |
| arm_3R | 26419427..26419571 | 730..874 | 100 | <- | Minus |
| arm_3R | 26420762..26421050 | 274..562 | 100 | <- | Minus |
| arm_3R | 26421112..26421348 | 37..273 | 100 | <- | Minus |
| arm_3R | 26426923..26426942 | 17..36 | 100 | | Minus |
BS20714.pep Sequence
Translation from 16 to 1179
> BS20714.pep
MLLQRNKLGSVRPPKRCRSDMDNTSTSDIVIINGNSHPDLANMVAERMGI
KNGGCSVFHKSNRETIVEISDSVRGKDIYIIQTGTKDANNNIMELLIMAY
ACKTSSARSIVGVIPYLPYSKQCKMRKRGCIVSKLLAKMMCTSGLTHIIT
MDLHQKEIQGFFDIPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGVAK
KANSYAERLRLGLAVIHGEQKETDADEVDGRYSPPPTRNSTPQHAPTSSA
RQRTTSVSVGVPEHIVKVKPPLTIVGDVSGRIAIMVDDLIDDVQAFVAAA
EMLKENGACKIYVLATHGLLSSDAPRQLDESPIDEIVVTNTIPHEIQKLQ
CHKIKTIDISILIAEAIRRIHNKESMSYLFRNVTLED*
BS20714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-PG | 387 | CG2246-PG | 1..387 | 1..387 | 1975 | 100 | Plus |
| CG2246-PB | 387 | CG2246-PB | 1..387 | 1..387 | 1975 | 100 | Plus |
| CG2246-PJ | 385 | CG2246-PJ | 1..385 | 3..387 | 1947 | 98.7 | Plus |
| CG2246-PH | 406 | CG2246-PH | 1..406 | 1..387 | 1945 | 95.3 | Plus |
| CG2246-PA | 406 | CG2246-PA | 1..406 | 1..387 | 1945 | 95.3 | Plus |
