Clone BS20715 Report

Search the DGRC for BS20715

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)01239-RA
Protein status:BS20715.pep: full length peptide match
Sequenced Size:464

Clone Sequence Records

BS20715.complete Sequence

464 bp assembled on 2011-01-18

GenBank Submission: KX804630

> BS20715.complete
GAAGTTATCAGTCGACATGAGCACCGAATCGGCGAAGCCGGCACTCAGCC
AGGAGGCCATTGTGGCCCAGTTCCAACAGCTGCGCAATGAGCAGCGCAAT
TTGGTCAACAGTTTAAATACGCTCGAAATGGATTTGAGGGAACACAAAAC
TGTGATAGAAACTCTGGAGGCGGCGGATCCCGAACGGAAATGCTTTCGTC
AAATTGGTGGTGTGCTGTGCGAAAGGACCGTGAAGGAGGTGCTGCCACAG
CTGGTGGAGAACAAGGATTTCATCGCCAAGACCATCCAAATGGTCACCAA
TGACCTGAGCAAAAAGGGCAGTGAGCTGAACAAGTTCAAGGAGGAGCACA
ATATCAAGATTCGCGGCGAACACTTGGTTGCCGAAGGAGCCAAGGGCGAC
GATGCGGAGGACAAGGCGGAGAACCGTAATGTCCTGGTGTTCAACTGAAA
GCTTTCTAGACCAT

BS20715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)01239-RB 432 CG6302-PB 1..432 17..448 2160 100 Plus
l(3)01239-RA 432 CG6302-PA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)01239-RB 993 CG6302-RB 143..578 17..452 2165 99.8 Plus
l(3)01239-RA 819 CG6302-RA 143..578 17..452 2165 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11073707..11074011 452..148 1510 99.7 Minus
3L 28110227 3L 11074116..11074246 147..17 655 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:06:43 has no hits.

BS20715.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:30 Download gff for BS20715.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)01239-RA 145..575 17..447 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:03 Download gff for BS20715.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)01239-RA 143..573 17..447 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:33 Download gff for BS20715.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)01239-RA 143..573 17..447 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:33 Download gff for BS20715.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11073712..11074011 148..447 100 <- Minus
3L 11074116..11074246 17..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:03 Download gff for BS20715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11066812..11067111 148..447 100 <- Minus
arm_3L 11067216..11067346 17..147 100   Minus

BS20715.pep Sequence

Translation from 16 to 447

> BS20715.pep
MSTESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETL
EAADPERKCFRQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKK
GSELNKFKEEHNIKIRGEHLVAEGAKGDDAEDKAENRNVLVFN*

BS20715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)01239-PB 143 CG6302-PB 1..143 1..143 718 100 Plus
l(3)01239-PA 143 CG6302-PA 1..143 1..143 718 100 Plus