BS20716.complete Sequence
1178 bp assembled on 2011-01-18
GenBank Submission: KX805581
> BS20716.complete
GAAGTTATCAGTCGACATGATAAGCGCCGAGTGCCATTCAGAAGAATACA
CCCCAAATGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCC
CATCTGAAGCAGGATCCAAACGCGAAGGTGGCGTGTGAAACCGTCGCCAA
GACGGGCATGATTCTGCTGTGCGGCGAGATCACGTCTAAGGCTGTGGTCG
ACTACCAGAAGGTTGTTCGTGAGACAGTGCAGCACATTGGTTATGATGAC
TCCTCCAAGGGTTTCGATTGGAAGACACTTAACCTGCTTGTAGCCATCGA
GCAACAGTCGCCCAACATTGCCAACGGCGTTCATATCAACCGCGAAGAAG
AAGACGTCGGCGCTGGTGACCAGGGTATCATGTTTGGATATGCCACCGAC
GAAACCGAGGAATGTATGCCCCTAACCGTCGTTTTGGCTCACAAACTAAA
CGAAAAGATTGCTGAGCTGCGTCGCTCAGATGTGTTCTGGTGGGCTCGCC
CCGATTCCAAAACACAAGTAACCTGCGAGTACCTCTTCAATCAGGGATCA
GCAGTTCCCAAGCGTGTCCACACTATTGTAGTGTCCATGCAGCATTCTGA
AAAGATATCGTTAGAAACCCTGCGCTCGGAAGTAATGGAGAAAGTTGTTA
AAGTAGTCATTCCCGCCAAATACATTGATGCCAACACCATTGTCCACATC
AATCCTTGTGGGCTTTTTGTAATCGGTGGACCAATGGGTGACGCTGGGCT
TACAGGAAGAAAAATCATTGTAGATACTTACGGAGGCTGGGGCGCCCACG
GCGGCGGTGCATTCTCTGGCAAGGACTTCACCAAGGTTGACAGATCAGCT
GCATATGCAGCACGCTGGGTGGCCAAATCACTGGTTAAGGCCGGTCTCTG
CAAGCGCTGCCTTGTCCAAGTGTCCTACGCCATAGGTCTTGCTGAGCCTC
TCTCCATAACTGTGTTCGACTACGGAACTTCTCACAAGTCACAAAAAGAA
CTTCTGGATATCATCCGTCGAAACTTTGACCTCAGGCCCGGCAAGATTGT
CAAGGACCTAAACCTGCGCCAGCCGATATACCAGCGAACAAGCACTTATG
GACACTTCGGTCGCGCGGGCTTCTCGTGGGAGGAGGCCAAGCCTCTGGAG
ATTGACAACTGAAAGCTTTCTAGACCAT
BS20716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-RG | 1146 | CG2674-PG | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| Sam-S-RJ | 1227 | CG2674-PJ | 124..1227 | 59..1162 | 5520 | 100 | Plus |
| Sam-S-RC | 1227 | CG2674-PC | 124..1227 | 59..1162 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-RG | 1971 | CG2674-RG | 158..1303 | 17..1162 | 5730 | 100 | Plus |
| Sam-S-RJ | 2309 | CG2674-RJ | 316..1419 | 59..1162 | 5520 | 100 | Plus |
| Sam-S-RC | 2380 | CG2674-RC | 387..1490 | 59..1162 | 5520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 112687..113370 | 371..1054 | 3420 | 100 | Plus |
| 2L | 23513712 | 2L | 110754..110879 | 137..262 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 111004..111118 | 260..374 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 113434..113542 | 1054..1162 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 110405..110483 | 59..137 | 395 | 100 | Plus |
| 2L | 23513712 | 2L | 109751..109793 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:48 has no hits.
BS20716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:30 Download gff for
BS20716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 144..1288 | 17..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:05 Download gff for
BS20716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 158..1302 | 17..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:35 Download gff for
BS20716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 158..1302 | 17..1161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:35 Download gff for
BS20716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 113434..113541 | 1054..1161 | 100 | | Plus |
| 2L | 109751..109793 | 17..59 | 100 | -> | Plus |
| 2L | 110406..110483 | 60..137 | 100 | -> | Plus |
| 2L | 110755..110877 | 138..260 | 100 | -> | Plus |
| 2L | 111005..111117 | 261..373 | 100 | -> | Plus |
| 2L | 112690..113369 | 374..1053 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:05 Download gff for
BS20716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 110755..110877 | 138..260 | 100 | -> | Plus |
| arm_2L | 111005..111117 | 261..373 | 100 | -> | Plus |
| arm_2L | 109751..109793 | 17..59 | 100 | -> | Plus |
| arm_2L | 110406..110483 | 60..137 | 100 | -> | Plus |
| arm_2L | 112690..113369 | 374..1053 | 100 | -> | Plus |
| arm_2L | 113434..113541 | 1054..1161 | 100 | | Plus |
BS20716.pep Sequence
Translation from 16 to 1161
> BS20716.pep
MISAECHSEEYTPNDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMIL
LCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDWKTLNLLVAIEQQSPN
IANGVHINREEEDVGAGDQGIMFGYATDETEECMPLTVVLAHKLNEKIAE
LRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEKISLE
TLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKI
IVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLV
QVSYAIGLAEPLSITVFDYGTSHKSQKELLDIIRRNFDLRPGKIVKDLNL
RQPIYQRTSTYGHFGRAGFSWEEAKPLEIDN*
BS20716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-PG | 381 | CG2674-PG | 1..381 | 1..381 | 1998 | 100 | Plus |
| Sam-S-PJ | 408 | CG2674-PJ | 42..408 | 15..381 | 1920 | 100 | Plus |
| Sam-S-PC | 408 | CG2674-PC | 42..408 | 15..381 | 1920 | 100 | Plus |
| Sam-S-PE | 408 | CG2674-PE | 42..408 | 15..381 | 1868 | 96.7 | Plus |
| Sam-S-PA | 408 | CG2674-PA | 42..408 | 15..381 | 1868 | 96.7 | Plus |
