BS20717.complete Sequence
1163 bp assembled on 2011-01-18
GenBank Submission: KX800357
> BS20717.complete
GAAGTTATCAGTCGACATGTGTGACGATGAAGTTGCTGCTCTGGTCGTTG
ACAATGGCTCCGGCATGTGCAAGGCCGGTTTCGCCGGTGATGACGCTCCC
CGTGCCGTCTTCCCCTCCATCGTCGGTCGTCCACGCCACCAGGGTGTGAT
GGTCGGTATGGGCCAGAAGGACTCGTACGTCGGTGATGAGGCCCAGTCCA
AGCGTGGTATCCTCACCCTGAAATACCCCATCGAGCACGGTATCATCACC
AACTGGGATGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCT
GCGTGTTGCCCCCGAGGAGCACCCCGTCCTGCTGACTGAGGCCCCCCTGA
ACCCCAAGGCTAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTC
AACTCGCCCGCCATGTACGTCGCCATCCAGGCCGTGCTCTCCCTGTACGC
CTCCGGTCGTACCACCGGTATCGTTCTGGACTCCGGTGATGGTGTCTCCC
ACACCGTCCCCATCTATGAGGGTTATGCTCTGCCCCATGCCATCCTCCGT
CTGGATCTGGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGAC
CGAGCGCGGCTACTCTTTCACCACCACCGCTGAGCGTGAAATTGTCCGTG
ACATCAAGGAGAAGTTGTGCTATGTTGCCCTGGACTTCGAGCAGGAGATG
GCCACCGCCGCCGCCTCCACCTCCCTGGAGAAGTCGTACGAGCTTCCCGA
CGGACAGGTGATCACCATCGGCAACGAGCGTTTCCGTTGCCCCGAGTCCC
TGTTCCAGCCTTCCTTCCTGGGAATGGAATCCTGCGGCATCCACGAGACC
GTCTACAACTCCATCATGAAGTGCGATGTGGATATCCGTAAGGACCTGTA
CGCCAACATCGTCATGTCCGGTGGCACCACCATGTACCCCGGTATTGCCG
ATCGTATGCAGAAGGAGATCACCTCCCTGGCCCCATCCACCATCAAGATC
AAGATCATTGCTCCCCCAGAGCGCAAATACTCCGTCTGGATCGGTGGCTC
CATCCTGGCCTCTCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGGAGG
AGTACGACGAGTCCGGCCCTGGCATCGTCCACCGCAAGTGCTTCTAAAAG
CTTTCTAGACCAT
BS20717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act57B-RA | 1131 | CG10067-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| Act87E-RC | 1131 | CG18290-PC | 1..1131 | 17..1147 | 4275 | 91.9 | Plus |
| Act87E-RB | 1131 | CG18290-PB | 1..1131 | 17..1147 | 4275 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act57B-RA | 1724 | CG10067-RA | 97..1227 | 17..1147 | 5655 | 100 | Plus |
| Act87E-RC | 1853 | CG18290-RC | 82..1212 | 17..1147 | 4275 | 91.9 | Plus |
| Act87E-RB | 1643 | CG18290-RB | 158..1288 | 17..1147 | 4275 | 91.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20944843..20945934 | 56..1147 | 5460 | 100 | Plus |
| 3R | 32079331 | 3R | 13426604..13427734 | 17..1147 | 4275 | 91.9 | Plus |
| X | 23542271 | X | 5902698..5903828 | 17..1147 | 4140 | 91.1 | Plus |
| 2R | 25286936 | 2R | 6014270..6015400 | 1147..17 | 3030 | 84.5 | Minus |
| 3L | 28110227 | 3L | 21985349..21986277 | 15..943 | 3025 | 88.4 | Plus |
| 3R | 32079331 | 3R | 15440616..15441543 | 17..944 | 2975 | 88 | Plus |
| 3R | 32079331 | 3R | 15441601..15441807 | 941..1147 | 780 | 91.8 | Plus |
| 3L | 28110227 | 3L | 21986637..21986843 | 941..1147 | 735 | 90.3 | Plus |
| 2R | 25286936 | 2R | 20944117..20944157 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:53 has no hits.
BS20717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:31 Download gff for
BS20717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act57B-RA | 90..1218 | 17..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:06 Download gff for
BS20717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act57B-RA | 97..1225 | 17..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:36 Download gff for
BS20717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act57B-RA | 97..1225 | 17..1145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:36 Download gff for
BS20717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20944117..20944156 | 17..56 | 100 | -> | Plus |
| 2R | 20944844..20945932 | 57..1145 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:06 Download gff for
BS20717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16831622..16831661 | 17..56 | 100 | -> | Plus |
| arm_2R | 16832349..16833437 | 57..1145 | 100 | | Plus |
BS20717.pep Sequence
Translation from 16 to 1146
> BS20717.pep
MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVIT
IGNERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVM
SGGTTMYPGIADRMQKEITSLAPSTIKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKEEYDESGPGIVHRKCF*
BS20717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act57B-PA | 376 | CG10067-PA | 1..376 | 1..376 | 1967 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 1..376 | 1..376 | 1958 | 99.2 | Plus |
| Act87E-PB | 376 | CG18290-PB | 1..376 | 1..376 | 1958 | 99.2 | Plus |
| Act87E-PA | 376 | CG18290-PA | 1..376 | 1..376 | 1958 | 99.2 | Plus |
| Act88F-PA | 376 | CG5178-PA | 1..376 | 1..376 | 1933 | 97.3 | Plus |
