BS20719.complete Sequence
1436 bp assembled on 2011-01-18
GenBank Submission: KX801455
> BS20719.complete
GAAGTTATCAGTCGACATGGCCTCCCAGGAGTTTCGCGTGGAGAGCGACA
CCTTTGGCGAACTGAAGGTGCCCGCGGATAAGTACTATGGCGCCCAAACG
ATGCGATCCCAGATCAATTTCCCCATCGGCGGAGCCACCGAACGGATGCC
CAAACCCGTGGTCCAGGCCATGGGCATCCTGAAGAAGGCCGCCGCCGAGG
TGAACAAGGAGTTCGGACTGGACAGCAAGGTTAGCGAGGCGATCTCGAAG
GCGGCCGACGATGTGATCTCTGGCAAGCTATACGACGACCACTTCCCGCT
GGTCATCTGGCAGACGGGCTCGGGCACGCAGAGCAACATGAATGTGAATG
AGGTGATCAGCAATCGTGCCATTGAGCTGCTGGGCGGCAAACTGGGCTCC
AAGACGCCCGTGCATCCCAACGATCATGTGAACAAATCGCAGAGCTCCAA
CGATACCTTCCCCACCGCCATTCACATCTCGGTGGCGCTGGAGCTGAACA
ACAACCTTAAGCCGGCGATTAAGACGCTGCACGATGCGCTGCGTGCCAAG
TCGGAGGAGTTCAAGGACATTATCAAGATCGGACGCACGCATACGATGGA
TGCGGTGCCATTGACGCTGGGCCAAGAGTTCAGCGGCTATGCCCAGCAAT
TGGCCTACGCCCAGGAGCGCATCGATGCCTGTCTGCCGCGCGTCTATGAG
CTGGCTCTGGGCGGCACTGCTGTGGGTACGGGTCTGAACACACGCAAGGG
ATTCGCCGAGAAGTGCGCTGCAAAGATCGCCGAGCTGACCAGCCTGCCCT
TCGTTACCGCGCCCAACAAGTTCGAGGCACTGGCTGCCCGCGATGCCATG
GTGGAGGTGCATGGTGTGCTCAACACGATCGCCGTTAGCCTGATGAAGAT
TGCCAACGATATTCGTTTCCTTGGCTCCGGACCGCGTTGCGGTTTGGGTG
AGCTCTCGCTACCGGAGAACGAGCCAGGTAGCTCCATCATGCCCGGCAAG
GTGAATCCCACGCAATGCGAGTCGCTGACAATGCTCTCCGCCCAGGTGAT
GGGCAATCAGGTGGCGGTGACCATCGGTGGATCCAATGGGCACTTCGAGC
TGAATGTATTCAAGCCCCTGATCGTGTCCAATGTGCTGCGCTCCATTCGG
CTATTGTCTGATGGCAGCAGGACCTTCACTGCCAACTGTGTGAATGGCAT
CCAGGCGAACCGCGAGAATATTGCCAAGATCATGAACGAGTCGCTCATGC
TGGTGACCGCTCTGAATCCGCACATTGGTTACGACAAGGCTGCGAAAATT
GCAAAGACGGCGCACAAGAATGGCACCACACTCAAGGAGGAGGCCATCAA
TTTGGGTTACCTGACGGAGCAGCAGTTCAACGACTGGGTGCGACCCGAAC
AGATGCTGGGACCCAAGTGAAAGCTTTCTAGACCAT
BS20719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0255-RB | 1404 | CG4094-PB | 1..1404 | 17..1420 | 7020 | 100 | Plus |
| l(1)G0255-RA | 1488 | CG4094-PA | 86..1488 | 18..1420 | 7015 | 100 | Plus |
| CG4095-RA | 1512 | CG4095-PA | 122..1439 | 30..1344 | 2790 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0255-RB | 1668 | CG4094-RB | 119..1523 | 17..1421 | 7025 | 100 | Plus |
| l(1)G0255-RA | 1740 | CG4094-RA | 192..1595 | 18..1421 | 7020 | 100 | Plus |
| CG4095-RA | 1647 | CG4095-RA | 191..1508 | 30..1344 | 2790 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6680566..6681372 | 351..1157 | 4035 | 100 | Plus |
| X | 23542271 | X | 6682504..6683302 | 351..1149 | 2180 | 84.9 | Plus |
| 3L | 28110227 | 3L | 11464094..11465081 | 1146..162 | 1545 | 77.3 | Minus |
| X | 23542271 | X | 6681437..6681700 | 1158..1421 | 1320 | 100 | Plus |
| X | 23542271 | X | 6680298..6680501 | 152..355 | 1020 | 100 | Plus |
| X | 23542271 | X | 6679825..6679957 | 19..151 | 665 | 100 | Plus |
| 2L | 23513712 | 2L | 10190186..10190497 | 1147..836 | 540 | 78.2 | Minus |
| X | 23542271 | X | 6683371..6683557 | 1158..1344 | 335 | 78.6 | Plus |
| 3L | 28110227 | 3L | 11463841..11464002 | 1344..1183 | 285 | 78.4 | Minus |
| X | 23542271 | X | 6682225..6682412 | 158..342 | 230 | 76.1 | Plus |
| 2L | 23513712 | 2L | 10190847..10190998 | 486..335 | 190 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:04 has no hits.
BS20719.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:32 Download gff for
BS20719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RB | 141..1543 | 17..1419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:11 Download gff for
BS20719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RB | 119..1521 | 17..1419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:39 Download gff for
BS20719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RB | 119..1521 | 17..1419 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:39 Download gff for
BS20719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6679824..6679957 | 17..151 | 99 | -> | Plus |
| X | 6680298..6680498 | 152..352 | 100 | -> | Plus |
| X | 6680568..6681372 | 353..1157 | 100 | -> | Plus |
| X | 6681437..6681698 | 1158..1419 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:11 Download gff for
BS20719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6573857..6573990 | 17..151 | 99 | -> | Plus |
| arm_X | 6574331..6574531 | 152..352 | 100 | -> | Plus |
| arm_X | 6574601..6575405 | 353..1157 | 100 | -> | Plus |
| arm_X | 6575470..6575731 | 1158..1419 | 100 | | Plus |
BS20719.pep Sequence
Translation from 16 to 1419
> BS20719.pep
MASQEFRVESDTFGELKVPADKYYGAQTMRSQINFPIGGATERMPKPVVQ
AMGILKKAAAEVNKEFGLDSKVSEAISKAADDVISGKLYDDHFPLVIWQT
GSGTQSNMNVNEVISNRAIELLGGKLGSKTPVHPNDHVNKSQSSNDTFPT
AIHISVALELNNNLKPAIKTLHDALRAKSEEFKDIIKIGRTHTMDAVPLT
LGQEFSGYAQQLAYAQERIDACLPRVYELALGGTAVGTGLNTRKGFAEKC
AAKIAELTSLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIR
FLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNQVA
VTIGGSNGHFELNVFKPLIVSNVLRSIRLLSDGSRTFTANCVNGIQANRE
NIAKIMNESLMLVTALNPHIGYDKAAKIAKTAHKNGTTLKEEAINLGYLT
EQQFNDWVRPEQMLGPK*
BS20719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0255-PB | 467 | CG4094-PB | 1..467 | 1..467 | 2379 | 100 | Plus |
| l(1)G0255-PA | 495 | CG4094-PA | 29..495 | 1..467 | 2376 | 99.8 | Plus |
| CG4095-PA | 503 | CG4095-PA | 41..503 | 5..467 | 1958 | 82.1 | Plus |
| CG6140-PB | 470 | CG6140-PB | 8..469 | 5..466 | 1854 | 76.7 | Plus |
| CG6140-PA | 470 | CG6140-PA | 8..469 | 5..466 | 1854 | 76.7 | Plus |
