BS20726.complete Sequence
500 bp assembled on 2011-01-18
GenBank Submission: KX805120
> BS20726.complete
GAAGTTATCAGTCGACATGAGCAGCGTCGATGAAGATCTTACACCCGAGC
AGATCGCCGTGCTCCAGAAGGCGTTCAACAGCTTCGATCACCAGAAGACT
GGCTCCATCCCCACCGAGATGGTCGCCGACATACTGCGCCTGATGGGTCA
GCCCTTCGACAAGAAGATCCTGGAGGAACTGATCGAGGAGGTCGATGAGG
ACAAGTCCGGTCGCTTGGAATTCGGCGAGTTCGTCCAGCTGGCTGCCAAG
TTCATCGTGGAGGAGGATGCGGAGGCCATGCAGAAGGAGCTGCGCGAGGC
GTTCCGTTTGTACGATAAGCAGGGCAATGGCTTCATTCCCACCACCTGCC
TGAAGGAGATCCTCAAGGAGCTGGACGACCAGCTGACCGAACAGGAGCTG
GACATTATGATCGAGGAGATCGATTCCGATGGCTCCGGTACAGTGGATTT
CGATGAATTCATGGAGATGATGACTGGCGAGTAAAAGCTTTCTAGACCAT
BS20726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC73F-RC | 468 | CG7930-PC | 1..468 | 17..484 | 2340 | 100 | Plus |
TpnC73F-RA | 468 | CG7930-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
TpnC47D-RB | 468 | CG9073-PB | 16..468 | 32..484 | 1530 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC73F-RC | 1059 | CG7930-RC | 193..663 | 15..485 | 2355 | 100 | Plus |
TpnC73F-RA | 962 | CG7930-RA | 96..566 | 15..485 | 2355 | 100 | Plus |
TpnC47D-RB | 791 | CG9073-RB | 70..522 | 32..484 | 1530 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17047350..17047601 | 204..455 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 11274580..11274829 | 455..206 | 905 | 90.8 | Minus |
3L | 28110227 | 3L | 17046341..17046460 | 29..148 | 600 | 100 | Plus |
2R | 25286936 | 2R | 11274890..11275061 | 203..32 | 485 | 85.5 | Minus |
3L | 28110227 | 3L | 17046522..17046579 | 146..203 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:00 has no hits.
BS20726.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:25 Download gff for
BS20726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC73F-RA | 94..559 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:48 Download gff for
BS20726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC73F-RA | 98..563 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:16 Download gff for
BS20726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC73F-RA | 98..563 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:16 Download gff for
BS20726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17046341..17046458 | 29..146 | 100 | -> | Plus |
3L | 17046523..17046579 | 147..203 | 100 | -> | Plus |
3L | 17047350..17047601 | 204..455 | 100 | -> | Plus |
3L | 17047965..17047991 | 456..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:48 Download gff for
BS20726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17039441..17039558 | 29..146 | 100 | -> | Plus |
arm_3L | 17039623..17039679 | 147..203 | 100 | -> | Plus |
arm_3L | 17040450..17040701 | 204..455 | 100 | -> | Plus |
arm_3L | 17041065..17041091 | 456..482 | 100 | | Plus |
BS20726.pep Sequence
Translation from 16 to 483
> BS20726.pep
MSSVDEDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDKK
ILEELIEEVDEDKSGRLEFGEFVQLAAKFIVEEDAEAMQKELREAFRLYD
KQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFME
MMTGE*
BS20726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC73F-PC | 155 | CG7930-PC | 1..155 | 1..155 | 781 | 100 | Plus |
TpnC73F-PA | 155 | CG7930-PA | 1..155 | 1..155 | 781 | 100 | Plus |
TpnC47D-PB | 155 | CG9073-PB | 1..155 | 1..155 | 739 | 92.9 | Plus |
TpnC47D-PA | 155 | CG9073-PA | 1..155 | 1..155 | 739 | 92.9 | Plus |
TpnC41C-PB | 154 | CG2981-PB | 1..151 | 4..154 | 494 | 63.6 | Plus |