BS20728.complete Sequence
2402 bp assembled on 2011-02-17
GenBank Submission: KX801324
> BS20728.complete
GAAGTTATCAGTCGACATGGGCAACTTTGTGAGCAGACAGAACGCGGCGG
TGGAGGAGGCCGATCCGAGCACGAACAATGCCTACAAGTATCCACCGAGA
ATGGGTAACTTCTTTGGCACCCACTTCATCATGGGCGGCGAGCGCTTCGA
CACGCCCCAACCGGAATCGTACTTGTTTGGCGAGAATGCGGATCTCAATT
TCCTGGGCAATCGACCCACAGCCTTTCCGTATCCCCCGCCGCAGGCCAAT
GAACCGACGAAGACCCTGAAGAGTCTGGTCAACATTCGCAAGGAGTCGGT
GCGTTTCGTCAAGACGATGAACGACAAGAAGCTGGGCGGTGTACTCGAGA
AGCCCAAGATGAAGGAGATTGATCGGGACTTGGATCTGGACAAGGAGAAG
TCCAACGTGACCATCGAGGATGTGGATGGAAATGTGCTCTGCTCGATGGG
TTTGGGTGGCGGTGATGCCGATATGACGCCCCCACCGCCGCCCTGCTCTT
ACAACATCGAGTTTACCTTTGACTCGGACGCCAAGTGCGCCATTACCATT
TACTATTTCTGCTCGGAGGATGTCAGTCCCAGCGGCGTGACACTGGTGCC
GCGCGAGGGTCTCACCTCGGAGACGTACCACTACGAGAAGGGCATCAATC
AGTGCTTCTCGCAGCCGAGCCATGTCTTCAATCCGCAGCAGATGCCCGAG
GATGAACTGGGCTATAGTCCCGGCCGTGAACAGTATCCCGTGGCCATTCA
CTGTGTGGTGGAGGAGGGCAGCGACGAGTGTCGGCAATCGCACACCACCA
TCTGTGTGATCGATCATCATCCGGAAAACGGCAGCTATGTGCTGCGTGCA
TTGAAGCAAAAGATCTTTGTGGATGGCTTGTGCTACCTGCTACAGGAGAT
CTATGGCATCGAGAACAAGGCCGTGAACAAAACGTCTCTGGACGAGGAGA
TCGACGATCATGGCAGCGAGTGTGTTATTTGCATGAGTGAGACGAGGGAT
ACGCTCATCCTGCCCTGCCGCCATCTCTGTTTGTGCAATTCATGCGCGGA
TTCGCTGCGCTATCAGGCCAACAATTGTCCCATTTGTCGCGCTCCGTTTC
GGGCTTTGCTTCAGATCCGTGCTGTCCAGAAGGGAATTAGCACGCATGTA
CTGCACCAGAACACGCCCACATCGGCGGCCGGGGAGCCGGCGCCAGTGGA
TGTTCCGCCAGGCTATATTCCAGTCTCACTAATTGAGGCACTCAACGGAC
CGCCACAGTATGTGGCCAGGGCTAGGAACAGCGAACACGATGTCACGGAC
TCAGCTGCCACCGTGGCCGCTTCGACAATGACCAGTGCTGACATCAAGGC
CACATCGCCGATCAAGTCCAGCAGCCAGCGTCGACCGAAGATCAAGAAAA
ACGCTTCGACGTGCACGTCGACCAGTGAGGTGGGCACCATTACCAATCAA
TCGGGCGGCGGCAATGGGTCATCCACACACTCTGTGGAGATTGAAAGCGA
TCCGAAGAAGTCCAGCACGGCCACCTGTACTTCGCCAACATTGGGGGCAT
CCACTTCGCCGGAACCGAAACAGGACAAGCTGCAGATTGTTAACGAACGA
AAGTATCCCAGATCCACAGCCGGTTCCGGTGGCGATGGCTCCGCGGGTAC
CGATGACGATGTGGACAGTGAGAACGAGAAGCTATCGCCTCTGCTATCAC
CCGGCAGCAAGAGCAAGAACGTTTCTAGCAAATCGCTGAAGCAGGTGGTG
GCCTGCCTGGAAGCGGATGATGATGTCGATAATAAGAGCAGCACTGGTGA
TGGGCCGACCGAGGAGTCCAGCCTAAAGAAGGGTTCGTCGATAAAGCGCA
CCAAACCGAGACCAGAACTTAGCGGAAGCGGTGCACCCTCACCCGCCGAG
GCCACGGCCGAGGATTCGGATTACTACACGCCGGAGGATACTCAGAATTC
GATATTAAGCCCACTGTGCCCCACGGAGCGAGCCAAAAGCGGTGATCCCC
TTGGCGCCGGCAGTCTGGGCAATGGCGGTCTCAGCGTGGGCAGGAGCGCA
GGATCAGTGGGCGGACAAGCTGGAGTGGGACCCGTCGTTGTGGGTTTCAG
TAGTGCAGTTAAGAAGAACCTGCACAAAAAGTCCACATCGGTGGGCAACA
TGGTGGGCTCCGGATCGGTGACAACGGTTGTGGACTTGAAGTCCAACAAC
GTAAGCTCCCTGCCAGACATGTTGGACAGCCCAATCAGCGGCAACTCGGC
CTCGACGCGCAGCTCCAGTGATAGCTACTCCTCCAGTTCGTCCACCAAGC
AGCTGCTCAGCTCCAATCCGACCACTACGGCGGCCAATATTATCGTAGAT
GACAAGACAGCTCTGCAGAATGCCGTCAATGTTTAGAAGCTTTCTAGACC
AT
BS20728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9941-RA | 2370 | CG9941-PA | 1..2370 | 17..2386 | 11835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9941-RA | 3113 | CG9941-RA | 302..2672 | 17..2387 | 11840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13720417..13721676 | 1276..17 | 6285 | 99.9 | Minus |
| X | 23542271 | X | 13719411..13720353 | 2216..1274 | 4715 | 100 | Minus |
| X | 23542271 | X | 13719175..13719349 | 2387..2213 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:02:57 has no hits.
BS20728.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:38 Download gff for
BS20728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9941-RA | 350..2719 | 17..2386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:25 Download gff for
BS20728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9941-RA | 302..2671 | 17..2386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:38 Download gff for
BS20728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9941-RA | 302..2671 | 17..2386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:38 Download gff for
BS20728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13719176..13719345 | 2217..2386 | 100 | <- | Minus |
| X | 13719411..13720351 | 1276..2216 | 100 | <- | Minus |
| X | 13720418..13721676 | 17..1275 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:25 Download gff for
BS20728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13613209..13613378 | 2217..2386 | 100 | <- | Minus |
| arm_X | 13613444..13614384 | 1276..2216 | 100 | <- | Minus |
| arm_X | 13614451..13615709 | 17..1275 | 99 | | Minus |
BS20728.pep Sequence
Translation from 16 to 2385
> BS20728.pep
MGNFVSRQNAAVEEADPSTNNAYKYPPRMGNFFGTHFIMGGERFDTPQPE
SYLFGENADLNFLGNRPTAFPYPPPQANEPTKTLKSLVNIRKESVRFVKT
MNDKKLGGVLEKPKMKEIDRDLDLDKEKSNVTIEDVDGNVLCSMGLGGGD
ADMTPPPPPCSYNIEFTFDSDAKCAITIYYFCSEDVSPSGVTLVPREGLT
SETYHYEKGINQCFSQPSHVFNPQQMPEDELGYSPGREQYPVAIHCVVEE
GSDECRQSHTTICVIDHHPENGSYVLRALKQKIFVDGLCYLLQEIYGIEN
KAVNKTSLDEEIDDHGSECVICMSETRDTLILPCRHLCLCNSCADSLRYQ
ANNCPICRAPFRALLQIRAVQKGISTHVLHQNTPTSAAGEPAPVDVPPGY
IPVSLIEALNGPPQYVARARNSEHDVTDSAATVAASTMTSADIKATSPIK
SSSQRRPKIKKNASTCTSTSEVGTITNQSGGGNGSSTHSVEIESDPKKSS
TATCTSPTLGASTSPEPKQDKLQIVNERKYPRSTAGSGGDGSAGTDDDVD
SENEKLSPLLSPGSKSKNVSSKSLKQVVACLEADDDVDNKSSTGDGPTEE
SSLKKGSSIKRTKPRPELSGSGAPSPAEATAEDSDYYTPEDTQNSILSPL
CPTERAKSGDPLGAGSLGNGGLSVGRSAGSVGGQAGVGPVVVGFSSAVKK
NLHKKSTSVGNMVGSGSVTTVVDLKSNNVSSLPDMLDSPISGNSASTRSS
SDSYSSSSSTKQLLSSNPTTTAANIIVDDKTALQNAVNV*
BS20728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9941-PA | 789 | CG9941-PA | 1..789 | 1..789 | 4113 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 393..760 | 420..772 | 162 | 21.1 | Plus |
