BS20729.complete Sequence
1283 bp assembled on 2011-01-18
GenBank Submission: KX800707
> BS20729.complete
GAAGTTATCAGTCGACATGTCTCATCGTAAGTTCTCGGCACCCCGCCATG
GCTCCATGGCCTTCTACCCCAAGAAGCGCTCAGCTCGCCATCGCGGTAAG
GTTAAGGCCTTCCCCAAGGATGACGCCAGCAAGCCAGTCCATCTGACCTG
CTTCATCGGCTACAAGGCCGGCATGACCCACATTGTGCGCGAGGCCGATC
GTCCTGGCTCCAAGATCAACAAGAAGGAGGTGGTCGAGGCCGTCACCGTT
CTGGAGACCCCGCCCATGATTGTGGTCGGTGCTGTCGGCTACATCGAGAC
TCCCTTCGGTCTGCGTGCCCTGGTCAACGTTTGGGCCCAGCATCTCTCCG
AGGAGTGCCGTCGTCGCTTCTACAAGAACTGGTACAAGAGCAAGAAGAAG
GCATTCACCAAGGCCAGCAAGAAGTGGACCGATGATCTCGGCAAGAAGAG
CATCGAGAATGACTTCCGCAAGATGCTGCGCTACTGCAAGGTGATCCGTG
TGATTGCCCACTCGCAGATCCGCTTGATCAAGCAGCGCCAAAAGAAGGCC
CATGTCATGGAGATCCAGCTGAACGGCGGCTCCATCGAGGACAAGGTCAA
GTGGGCTCGCGAGCATTTGGAGAAGCCCATCCAGGTCAGCAACGTCTTCG
GCCAGGACGAGATGATCGACTGCGTTGGTGTGACCAAGGGTAAGGGTTTC
AAGGGTGTCACCTCGCGTTGGCACACCAAGAAGCTGCCCCGCAAGACGCA
CAAGGGTCTGCGCAAGGTGGCCTGTATTGGTGCCTGGCATCCGTCGCGTG
TGTCCACCACCGTGGCCCGTGCCGGTCAGAAGGGTTACCACCACCGTACC
GAGATCAACAAGAAGATCTACCGCATCGGCGCTGGCATCCACACCAAGGA
CGGCAAGGTCATCAAGAACAACGCCTCCACCGAGTACGATCTGACCGACA
AGAGCATCACGCCCATGGGTGGCTTCCCCCACTACGGTGAGGTCAACAAC
GACTTCGTCATGATCAAGGGCTGCTGCATCGGCTCCAAGAAGCGCATCAT
CACCCTGCGCAAGTCCCTGCTGAAGCACACCAAGCGCTCTGCCCTGGAGC
AGATCAAGCTCAAGTTCATCGACACCTCGTCCAAGATGGGTCACGGTCGC
TTCCAGACCCCTGCCGACAAGCTGGCCTTCATGGGACCGCTCAAGAAGGA
TCGTCTCAAGGAGGAGGCTGCCGCTACCACCGCTGCTGCTGCCGCCGCCA
CCACCACCAGTGCTTAAAAGCTTTCTAGACCAT
BS20729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL3-RH | 1251 | CG4863-PH | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| RpL3-RA | 1251 | CG4863-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| RpL3-RD | 486 | CG4863-PD | 1..368 | 17..384 | 1840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL3-RH | 1610 | CG4863-RH | 34..1288 | 14..1268 | 6275 | 100 | Plus |
| RpL3-RA | 1381 | CG4863-RA | 34..1288 | 14..1268 | 6275 | 100 | Plus |
| RpL3-RG | 1688 | CG4863-RG | 708..1595 | 381..1268 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11223856..11224249 | 516..909 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 11224489..11224851 | 906..1268 | 1815 | 100 | Plus |
| 3R | 32079331 | 3R | 11222174..11222367 | 19..212 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 11222561..11222732 | 213..384 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 11223394..11223530 | 381..517 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:11 has no hits.
BS20729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:26 Download gff for
BS20729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 37..1285 | 17..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:52 Download gff for
BS20729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 37..1285 | 17..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:19 Download gff for
BS20729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 37..1285 | 17..1265 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:19 Download gff for
BS20729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11222173..11222367 | 17..212 | 99 | -> | Plus |
| 3R | 11222561..11222729 | 213..381 | 100 | -> | Plus |
| 3R | 11223395..11223530 | 382..517 | 100 | -> | Plus |
| 3R | 11223858..11224247 | 518..907 | 100 | -> | Plus |
| 3R | 11224491..11224848 | 908..1265 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:52 Download gff for
BS20729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7047895..7048089 | 17..212 | 99 | -> | Plus |
| arm_3R | 7048283..7048451 | 213..381 | 100 | -> | Plus |
| arm_3R | 7049117..7049252 | 382..517 | 100 | -> | Plus |
| arm_3R | 7049580..7049969 | 518..907 | 100 | -> | Plus |
| arm_3R | 7050213..7050570 | 908..1265 | 100 | | Plus |
BS20729.pep Sequence
Translation from 16 to 1266
> BS20729.pep
MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYK
AGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLR
ALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDF
RKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREH
LEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRK
VACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIK
NNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKS
LLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE
AAATTAAAAAATTTSA*
BS20729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL3-PH | 416 | CG4863-PH | 1..416 | 1..416 | 2187 | 100 | Plus |
| RpL3-PA | 416 | CG4863-PA | 1..416 | 1..416 | 2187 | 100 | Plus |
| RpL3-PD | 161 | CG4863-PD | 1..126 | 1..126 | 662 | 98.4 | Plus |
| RpL3-PG | 138 | CG4863-PG | 1..121 | 1..121 | 641 | 100 | Plus |
