BS20732.complete Sequence
1340 bp assembled on 2011-01-18
GenBank Submission: KX800307
> BS20732.complete
GAAGTTATCAGTCGACATGCCAACTCTGGGTCTCCTGTTCGCCTCCATCG
GCATTGCCGTGCTGGCGATGGGTGTGCCGCATTGCAGGGGCTACACCATC
AAGGAGGACGAATCCTTCCTGCAGCAACCGCACTATGCTAGCCAAGAGCA
GCTGGAGGACCTGTTTGCTGGCCTGGAGAAGGCGTACCCCAATCAGGCCA
AAGTCCACTTCCTTGGTCGATCTCTAGAAGGACGAAATCTGCTCGCCCTG
CAAATCTCGCGGAACACCCGGTCGCGGAATCTCCTTACACCTCCAGTAAA
GTACATAGCCAATATGCATGGAGACGAAACGGTGGGCAGGCAGCTCCTTG
TTTATATGGCACAATATCTGCTCGGTAATCACGAAAGAATCAGCGACCTG
GGCCAGCTGGTCAACAGCACCGATATCTACTTGGTGCCCACGATGAATCC
AGATGGCTATGCGTTGTCCCAGGAAGGCAACTGCGAGTCGCTGCCCAACT
ATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCC
GATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCA
GCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGC
TCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGAC
AACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGA
TCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTA
TGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAAC
GGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGC
GTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATC
CGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTG
CTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGA
TGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAG
AGGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTG
ACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAG
TGCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCC
TGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGT
TTTTACAGTCCCTATTATTTCTAGAAGCTTTCTAGACCAT
BS20732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RL | 1308 | CG4122-PL | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| svr-RF | 1308 | CG4122-PF | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| svr-RN | 4320 | CG4122-PN | 1..1274 | 17..1290 | 6370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RL | 2851 | CG4122-RL | 196..1504 | 17..1325 | 6545 | 100 | Plus |
| svr-RF | 3130 | CG4122-RF | 475..1783 | 17..1325 | 6545 | 100 | Plus |
| svr-RN | 4986 | CG4122-RN | 196..1469 | 17..1290 | 6370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 502287..502766 | 709..1188 | 2400 | 100 | Plus |
| X | 23542271 | X | 500153..500609 | 17..473 | 2285 | 100 | Plus |
| X | 23542271 | X | 501982..502221 | 470..709 | 1200 | 100 | Plus |
| X | 23542271 | X | 502835..502972 | 1188..1325 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:16 has no hits.
BS20732.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:27 Download gff for
BS20732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RF | 475..1782 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:54 Download gff for
BS20732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RF | 475..1782 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:21 Download gff for
BS20732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RF | 475..1782 | 17..1324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:21 Download gff for
BS20732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 501985..502220 | 473..708 | 100 | -> | Plus |
| X | 500153..500608 | 17..472 | 100 | -> | Plus |
| X | 502287..502766 | 709..1188 | 100 | -> | Plus |
| X | 502836..502971 | 1189..1324 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:54 Download gff for
BS20732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 394186..394641 | 17..472 | 100 | -> | Plus |
| arm_X | 396018..396253 | 473..708 | 100 | -> | Plus |
| arm_X | 396320..396799 | 709..1188 | 100 | -> | Plus |
| arm_X | 396869..397004 | 1189..1324 | 100 | | Plus |
BS20732.pep Sequence
Translation from 16 to 1323
> BS20732.pep
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYF*
BS20732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-PL | 435 | CG4122-PL | 1..435 | 1..435 | 2305 | 100 | Plus |
| svr-PF | 435 | CG4122-PF | 1..435 | 1..435 | 2305 | 100 | Plus |
| svr-PN | 1439 | CG4122-PN | 1..425 | 1..425 | 2249 | 100 | Plus |
| svr-PM | 1406 | CG4122-PM | 1..425 | 1..425 | 2249 | 100 | Plus |
| svr-PG | 1439 | CG4122-PG | 1..425 | 1..425 | 2249 | 100 | Plus |
| svr-PN | 1439 | CG4122-PN | 443..841 | 29..418 | 672 | 37.3 | Plus |
| svr-PM | 1406 | CG4122-PM | 443..841 | 29..418 | 672 | 37.3 | Plus |
