BS20733.complete Sequence
2009 bp assembled on 2011-02-17
GenBank Submission: KX804090
> BS20733.complete
GAAGTTATCAGTCGACATGCCGAACCGCCAGGACTACGATGCACAGTCCT
CGAAGCACTCGGAACAGTCCTTCTTCCGCTTCAACCGGGTGGCCAAAGTA
CCCCTGGGGGTGGATGACGATGACAGCTACCTGGACATGTCCGATGAGAC
GGCCCAGCTCAAGCCGCGCCAGCAGCACTGGGCCAATAAGATGCAATTCG
TCCTGGCCTGCATAGGATACTCGGTGGGTCTGGGCAACGTCTGGCGTTTT
CCGTACATGTGCTACAAGAGTGGCGGTGGTGTTTTTCTAGTACCTTATTG
CATAATACTGTTCATATGCAGCATTCCGCTGCTCTTCATGGAGCTGTCCG
TTGGCCAATACACCGGTCGAGGACCCATTGGAGCACTGGGTCAACTGTGT
CCTCTGTTCAAGGGAGCCGGACTCGCCAGCGTGGTCGTCTCGTTCCTCAT
GTCCACCTACTATAGTGTCATCATAGGCTACTCCATCTACTACTTCTTTA
CGTCGTTCAAAACGGAAATGCCCTGGATCGACTGCAACAACAGGTGGAAC
ACGCCCGATTGCTGGGTGCCACAGCGCAAGGGGATTAATGCCAGTGCGCC
GGACACATCTCGCACTCCATCCGAGGAATTCTTCGAAAACAAGGTCCTGC
AGATCAGCGGTGGCCTGGAGTATCCGGGCATGATGCGCTGGGAGCTATTT
GCCTGCCTGATCTGCGCCTGGCTAATGGTCTACTTCGCCACGTGGAAGTC
GATCAAGTCGTCGGCGAAGGTGCGCTACTTCACGGCCACGTTTCCGTTCG
TGCTGATCATCATCCTGATGGTGCGCGCGGTGACCCTGGATGGAGCTGCT
GAGGGTTTGCGCTTCTTCTTCCGTCCCAAGTGGTCGGAGCTGAAGAACGC
CAATGTGTGGATCAACGCCGCATCCCAGAACTTCAACTCGCTGGGCATTA
CATTCGGATCCATGATCTCCTTTGCCAGCTACAACAAGTACAACAACAAT
ATCCTGCGAGATACCGTGGCAGTGAGTGCGGTGAATATGATCACCAGTCT
CCTGGTGGGCATCTTTGCCTTCTCCACGCTGGGCAATCTGGCGCTGGAGC
AGAACACCAATGTGAGGGACGTCATCGGTGATGGACCGGGCATGATATTC
GTGGTGTATCCCCAGGCGATGGCTAAGATGCCGTACGCTCAGCTCTGGGC
GGTCATGTTCTTCTTCATGCTGCTCTGCCTAGGTCTGAACTCGCAGTTTG
CCATTGTGGAGGTTGTGGTCACGTCCATACAGGATGGCTTTCCGCGGTGG
ATCAAGCGGCACCTGGGCTATCACGAAATCGTGGTCCTGTTCGTCTGTGT
CATCTCATGTCTCTTCGGGATGCCCAACATCATACAGGGTGGCATCTACT
ACTTCCAGCTAATGGATCACTACGCCGCCTCCGTGACGATCATGTTTCTG
GCCTTCTGTCAAATGATTGCCATTGCCTGGTTCTACGGCACGGGAAGACT
GTCGAAGAACGTCAAGCAAATGACCGGAAAGGCGCCTTCGTTCTATCTCA
GATCCTGCTGGCTAGTCCTGGGACCCTGCCTCCTCTTTGCCATCTGGGTA
TTGAGTCTGATCAACTACCACGAGCCCACCTACCACAATGGACGCTATAC
CTATCCGGACTGGGCCTACGGAATAGGCTGGATGTTCGCTTCATTCTCGC
TGATCTGCATACCTGGATATGCGGTTATCAACTTCCTGCGCTCCAGTGGA
GATACCTTTTGGGAACGCATCCGGAACACGCTGAGACCCAACATCTACGA
GTGCAAGATTTGCGGGGAACACCACTGCGAACACGACTATCCGGAGCAGG
AGCAGTTTATGCTGGCCCAGGAAATGGCCACAGTGTACAAGCCCACCAAC
CCACACCTGCTCAATCTCGGCCAGAAGTGCGGCTACAACGCCATGCAAGC
CTCACCCTCACATGCGGAGGCAGGAGGACCATGTGGCCAGTAGAAGCTTT
CTAGACCAT
BS20733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ine-RA | 1977 | CG15444-PA | 1..1977 | 17..1993 | 9885 | 100 | Plus |
| ine-RF | 2832 | CG15444-PF | 939..2832 | 100..1993 | 9470 | 100 | Plus |
| ine-RE | 2832 | CG15444-PE | 939..2832 | 100..1993 | 9470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ine-RA | 2272 | CG15444-RA | 156..2138 | 11..1993 | 9900 | 99.9 | Plus |
| ine-RF | 3436 | CG15444-RF | 1439..3332 | 100..1993 | 9470 | 100 | Plus |
| ine-RE | 3458 | CG15444-RE | 1461..3354 | 100..1993 | 9470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4468666..4469618 | 1589..637 | 4765 | 100 | Minus |
| 2L | 23513712 | 2L | 4468134..4468361 | 1993..1766 | 1140 | 100 | Minus |
| 2L | 23513712 | 2L | 4471978..4472158 | 280..100 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 4468425..4468601 | 1765..1589 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 4470993..4471129 | 414..278 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 4469832..4469966 | 547..413 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 4469675..4469770 | 636..541 | 480 | 100 | Minus |
| 2L | 23513712 | 2L | 4472949..4473037 | 99..11 | 430 | 98.9 | Minus |
| 2R | 25286936 | 2R | 24407017..24407126 | 999..890 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:05:43 has no hits.
BS20733.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:38 Download gff for
BS20733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RA | 160..2136 | 17..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:59 Download gff for
BS20733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RA | 162..2138 | 17..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:49 Download gff for
BS20733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RA | 162..2138 | 17..1993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:49 Download gff for
BS20733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4471980..4472158 | 100..278 | 100 | <- | Minus |
| 2L | 4472949..4473031 | 17..99 | 100 | | Minus |
| 2L | 4469836..4469965 | 414..543 | 100 | <- | Minus |
| 2L | 4470994..4471128 | 279..413 | 100 | <- | Minus |
| 2L | 4468134..4468361 | 1766..1993 | 100 | <- | Minus |
| 2L | 4468425..4468601 | 1589..1765 | 100 | <- | Minus |
| 2L | 4468667..4469618 | 637..1588 | 100 | <- | Minus |
| 2L | 4469675..4469767 | 544..636 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:59 Download gff for
BS20733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4468134..4468361 | 1766..1993 | 100 | <- | Minus |
| arm_2L | 4468425..4468601 | 1589..1765 | 100 | <- | Minus |
| arm_2L | 4468667..4469618 | 637..1588 | 100 | <- | Minus |
| arm_2L | 4469675..4469767 | 544..636 | 100 | <- | Minus |
| arm_2L | 4469836..4469965 | 414..543 | 100 | <- | Minus |
| arm_2L | 4470994..4471128 | 279..413 | 100 | <- | Minus |
| arm_2L | 4471980..4472158 | 100..278 | 100 | <- | Minus |
| arm_2L | 4472949..4473031 | 17..99 | 100 | | Minus |
BS20733.pep Sequence
Translation from 16 to 1992
> BS20733.pep
MPNRQDYDAQSSKHSEQSFFRFNRVAKVPLGVDDDDSYLDMSDETAQLKP
RQQHWANKMQFVLACIGYSVGLGNVWRFPYMCYKSGGGVFLVPYCIILFI
CSIPLLFMELSVGQYTGRGPIGALGQLCPLFKGAGLASVVVSFLMSTYYS
VIIGYSIYYFFTSFKTEMPWIDCNNRWNTPDCWVPQRKGINASAPDTSRT
PSEEFFENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSA
KVRYFTATFPFVLIIILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWIN
AASQNFNSLGITFGSMISFASYNKYNNNILRDTVAVSAVNMITSLLVGIF
AFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAMAKMPYAQLWAVMFFF
MLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCLF
GMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVK
QMTGKAPSFYLRSCWLVLGPCLLFAIWVLSLINYHEPTYHNGRYTYPDWA
YGIGWMFASFSLICIPGYAVINFLRSSGDTFWERIRNTLRPNIYECKICG
EHHCEHDYPEQEQFMLAQEMATVYKPTNPHLLNLGQKCGYNAMQASPSHA
EAGGPCGQ*
BS20733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ine-PA | 658 | CG15444-PA | 1..658 | 1..658 | 3562 | 100 | Plus |
| ine-PF | 943 | CG15444-PF | 300..943 | 15..658 | 3417 | 98.1 | Plus |
| ine-PE | 943 | CG15444-PE | 300..943 | 15..658 | 3417 | 98.1 | Plus |
| ine-PB | 943 | CG15444-PB | 300..943 | 15..658 | 3417 | 98.1 | Plus |
| ine-PC | 943 | CG15444-PC | 300..943 | 15..658 | 3417 | 98.1 | Plus |
