BS20734.complete Sequence
3032 bp assembled on 2011-02-17
GenBank Submission: KX804236
> BS20734.complete
GAAGTTATCAGTCGACATGTTTCCGAACCAGAACAATGGAGCCGCTCCTG
GGCAGGGTCCAGCAGTTGATGGCCAACAGAGCCTCAACTACAACGGCCTG
CCCGCCCAGCAGCAGCAGCAATTGGCACAGTCCACGAAAAATGTGCGAAA
GAAGCCCTACGTAAAGATCACCGAACAACCGGCAGGAAAGGCGCTAAGGT
TTCGCTACGAGTGCGAGGGACGCTCGGCGGGATCCATTCCGGGCGTGAAC
TCTACGCCGGAGAACAAGACCTATCCGACAATCGAAATTGTGGGCTACAA
GGGACGCGCCGTAGTTGTTGTCTCCTGCGTCACAAAGGATACGCCATATC
GTCCTCATCCCCACAATTTAGTTGGCAAGGAGGGCTGCAAGAAGGGCGTC
TGTACACTGGAGATCAACAGTGAGACAATGCGAGCGGTGTTCAGTAACTT
GGGTATCCAGTGTGTCAAAAAGAAGGACATTGAGGCGGCGCTCAAGGCGC
GCGAGGAGATCCGTGTGGATCCGTTTAAGACTGGCTTTTCGCATCGTTTC
CAGCCCTCGAGCATAGATCTGAATTCGGTGCGATTGTGCTTTCAAGTATT
CATGGAGAGCGAGCAGAAGGGTCGATTCACCTCGCCACTGCCGCCGGTAG
TTTCGGAGCCCATCTTCGATAAGAAGGCCATGTCCGACCTGGTCATCTGC
CGGCTGTGTAGCTGCTCGGCCACCGTTTTCGGCAACACCCAGATCATCCT
GCTCTGCGAGAAGGTGGCCAAGGAGGACATCTCCGTGCGATTCTTTGAGG
AGAAGAATGGCCAGAGTGTTTGGGAGGCCTTTGGTGACTTCCAGCACACG
GATGTCCACAAGCAGACTGCCATTACCTTTAAGACGCCGCGCTATCATAC
CCTGGACATCACAGAGCCCGCCAAGGTTTTTATTCAACTGCGACGTCCCT
CGGATGGAGTTACCAGCGAGGCCCTGCCCTTCGAGTACGTGCCAATGGAC
TCAGGTAAACATACATTCTGGAATCTTCATCGGCACCTCAAGCGGAAGCC
GGACGAAGATCTCTTTCAGCAGATCCTCAGGTTGGACGCCAAACGGGAAG
TGCAGCCGCCAACGATTGAGGTTATCGATTTGGATACACCGAAAATAGAT
GTGCAACGTGAGATACCTTCGGAAATGGAATTTAATCATGAGGAATCTCA
GCAATCAGAGCCAGCTCTTGAGCAAGAGCAGTCAGTGCAACAGGAGCAAT
ATACTCAAGAGCAATCATTGCAACAAGAGCAATATACACAAGAGCAATCA
TTACAGCAGGAACAATATTTACAACAACTAGAACAGCAGCAATCTTTTCA
GCTCGAAGAACCGATGCAACAGGATCAGGAACTACCAGCGCAGCAATCGT
TCGATCAGGCTATAGATCACTTGCCCGATCACACCTCAGATCATATTCCC
GAGGACATGGAGGCGGCGGATGCCCATGCAGAAGCCGAGGCCCATCGCCT
GCGATCCGAGCAGGAAAAAGAGATTGACACCATTATCGATGAAAAGGTAC
GAGAACTGGAGCAACTGGATTTGGGTCAGCAGTTGGAGCCACGTCCTTTG
ACGGCCAACGATAAGATCACCGAGTGGATGAAGTCCAGTGAGATTGAACA
GCAAGTCCATGAGCCCAGTCCCACTGCTGAGGCAGATGTTTTGGACTCCG
CCCTTGAGATATCCAAGGCAGATAAGACCCTTGACGAACTCCTTGAGACC
GTGGCCGAACTGGATGAGATATACACGGACTTCAAAGTTCAGAGGGATAC
GTACAAGAATACCATACAAAATGAGTTGGCGGGACTTCAGGGTCGTGCGC
CGCTGCAGGTGGAGGATAGCTTCGATGACGCTGCCACCTACACAAGCTTA
CAGATTGCCTTCAAGAATCCCGTCCTCATACCCATGGATGATATAATGCC
TCCAACTCCGCCCATGTCGCAATGCGCTCCCGAAGATGCCCATCAGCATT
ACGATCCCGTCGAGGTGAACTCTCAGGCCCGCAAGCCGGAGACTCCGATG
CGACCAGTTCCTCCAGTCCCGCCGGCAATTCTAACAATTCAATATCCACC
AGAAGAGGATAAGTTGCCCCCATTGCCACCGAAAAGAATTCGAAAGCAGG
ACAGCAATGCTGAGAATCGATCAATCGAGGCCAATACGGTTCAGACCAAG
CCATCTACAGGCGAGTCTCCTCTAAACAAAAGACTCCCACCTGCTCCAAA
GAACCCGAACTTTAATACACTGCCCAGGCAGAAGAAGCCGGGATTCTTTT
CGAAGCTTTTTTCGCGCCGCAAGAGCAAACCAGATTTGGCCCAGGGGCAG
GAGAACAGCTCTATATTGGATTCCAAGGCAAATAGCAGGGAGCCAAGTAT
AGGTCACTTTAACATGCAAGACCCGATGAGGGCATCGCTGCGCTCCTCCA
AGTCAGCTGCCCCGTTCATCTCGAATCCAGCGCCTGCCAAATCCAGTCCT
GTCAAGGCCAAGAAACCAGGATCAAAGCTGACCAAGCCCGTGGGCAGGAG
TGTGAGCAGTGTTTCCGGAAAGAGACCCGCCTACCTGAATGCTGATGTGG
TGCATATACCGCTGAAAGGTGACAGTGTCAATAGTTTGCCACAGCAACAG
CGAACCGAGGGCTACTCCCAATCCAGTACGATTTCGGTGGGAGCTGGGTT
GGATAGACGCACTGCATCTGCACTACAGCTGGCTGACATACCAATTAGTG
AGGGCGGAATGGAACTGGTTGCCATTGCCGATCGACAAAGTCTACACAAT
TTGGTCAGCTCCATAGAGGGTCACTTCAATGTCCAACTGGACCCCAATTT
GGATCTGACCGAGGCCGAGCACTTTGCCCTGTACACGAGTATTCCGCCAC
TTGCGGCGGCCAGTGAATTTGACGAGACCTCCGCCTACTATGCTCCCGTG
GATGCTGGCGAGATTTTAACGCCGGATGAGGTGGCCAAGCGATTGGCTGC
GGCAAATGGCATCTAGAAGCTTTCTAGACCAT
BS20734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dl-RC | 3000 | CG6667-PC | 1..3000 | 17..3016 | 15000 | 100 | Plus |
| dl-RF | 3000 | CG6667-PF | 1..3000 | 17..3016 | 15000 | 100 | Plus |
| dl-RB | 2034 | CG6667-PB | 1..988 | 17..1004 | 4940 | 100 | Plus |
| dl-RC | 3000 | CG6667-PC | 1240..1302 | 1223..1285 | 195 | 87.3 | Plus |
| dl-RC | 3000 | CG6667-PC | 1207..1269 | 1256..1318 | 195 | 87.3 | Plus |
| dl-RF | 3000 | CG6667-PF | 1207..1269 | 1256..1318 | 195 | 87.3 | Plus |
| dl-RF | 3000 | CG6667-PF | 1240..1302 | 1223..1285 | 195 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dl-RC | 4724 | CG6667-RC | 582..3582 | 17..3017 | 15005 | 100 | Plus |
| dl-RF | 4481 | CG6667-RF | 339..3339 | 17..3017 | 15005 | 100 | Plus |
| dl-RB | 2833 | CG6667-RB | 582..1569 | 17..1004 | 4940 | 100 | Plus |
| dl-RC | 4724 | CG6667-RC | 1788..1850 | 1256..1318 | 195 | 87.3 | Plus |
| dl-RC | 4724 | CG6667-RC | 1821..1883 | 1223..1285 | 195 | 87.3 | Plus |
| dl-RF | 4481 | CG6667-RF | 1545..1607 | 1256..1318 | 195 | 87.3 | Plus |
| dl-RF | 4481 | CG6667-RF | 1578..1640 | 1223..1285 | 195 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17439788..17441881 | 3017..924 | 10470 | 100 | Minus |
| 2L | 23513712 | 2L | 17441938..17442334 | 927..531 | 1985 | 100 | Minus |
| 2L | 23513712 | 2L | 17442652..17442986 | 351..17 | 1675 | 100 | Minus |
| 2L | 23513712 | 2L | 17442404..17442583 | 530..351 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 17441487..17441549 | 1285..1223 | 195 | 87.3 | Minus |
| 2L | 23513712 | 2L | 17441520..17441582 | 1318..1256 | 195 | 87.3 | Minus |
Blast to na_te.dros performed 2014-11-27 07:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6988 | 1185..1439 | 184 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2905..3000 | 1272..1373 | 136 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2926..2999 | 1221..1294 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2730..2869 | 1253..1395 | 131 | 56.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1154 | 1270..1361 | 118 | 58.7 | Plus |
BS20734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:39 Download gff for
BS20734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dl-RC | 583..3576 | 23..3016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:50 Download gff for
BS20734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dl-RF | 345..3338 | 23..3016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:27 Download gff for
BS20734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dl-RF | 345..3338 | 23..3016 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:27 Download gff for
BS20734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17442652..17442980 | 23..351 | 100 | | Minus |
| 2L | 17439789..17441879 | 926..3016 | 100 | <- | Minus |
| 2L | 17441940..17442334 | 531..925 | 100 | <- | Minus |
| 2L | 17442404..17442582 | 352..530 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:50 Download gff for
BS20734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17439789..17441879 | 926..3016 | 100 | <- | Minus |
| arm_2L | 17441940..17442334 | 531..925 | 100 | <- | Minus |
| arm_2L | 17442404..17442582 | 352..530 | 100 | <- | Minus |
| arm_2L | 17442652..17442980 | 23..351 | 100 | | Minus |
BS20734.pep Sequence
Translation from 16 to 3015
> BS20734.pep
MFPNQNNGAAPGQGPAVDGQQSLNYNGLPAQQQQQLAQSTKNVRKKPYVK
ITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVV
VVSCVTKDTPYRPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCV
KKKDIEAALKAREEIRVDPFKTGFSHRFQPSSIDLNSVRLCFQVFMESEQ
KGRFTSPLPPVVSEPIFDKKAMSDLVICRLCSCSATVFGNTQIILLCEKV
AKEDISVRFFEEKNGQSVWEAFGDFQHTDVHKQTAITFKTPRYHTLDITE
PAKVFIQLRRPSDGVTSEALPFEYVPMDSGKHTFWNLHRHLKRKPDEDLF
QQILRLDAKREVQPPTIEVIDLDTPKIDVQREIPSEMEFNHEESQQSEPA
LEQEQSVQQEQYTQEQSLQQEQYTQEQSLQQEQYLQQLEQQQSFQLEEPM
QQDQELPAQQSFDQAIDHLPDHTSDHIPEDMEAADAHAEAEAHRLRSEQE
KEIDTIIDEKVRELEQLDLGQQLEPRPLTANDKITEWMKSSEIEQQVHEP
SPTAEADVLDSALEISKADKTLDELLETVAELDEIYTDFKVQRDTYKNTI
QNELAGLQGRAPLQVEDSFDDAATYTSLQIAFKNPVLIPMDDIMPPTPPM
SQCAPEDAHQHYDPVEVNSQARKPETPMRPVPPVPPAILTIQYPPEEDKL
PPLPPKRIRKQDSNAENRSIEANTVQTKPSTGESPLNKRLPPAPKNPNFN
TLPRQKKPGFFSKLFSRRKSKPDLAQGQENSSILDSKANSREPSIGHFNM
QDPMRASLRSSKSAAPFISNPAPAKSSPVKAKKPGSKLTKPVGRSVSSVS
GKRPAYLNADVVHIPLKGDSVNSLPQQQRTEGYSQSSTISVGAGLDRRTA
SALQLADIPISEGGMELVAIADRQSLHNLVSSIEGHFNVQLDPNLDLTEA
EHFALYTSIPPLAAASEFDETSAYYAPVDAGEILTPDEVAKRLAAANGI*
BS20734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dl-PC | 999 | CG6667-PC | 1..999 | 1..999 | 5171 | 100 | Plus |
| dl-PF | 999 | CG6667-PF | 1..999 | 1..999 | 5171 | 100 | Plus |
| dl-PB | 677 | CG6667-PB | 1..509 | 1..454 | 1769 | 71.1 | Plus |
| dl-PA | 677 | CG6667-PA | 1..509 | 1..454 | 1769 | 71.1 | Plus |
| dl-PE | 677 | CG6667-PE | 1..509 | 1..454 | 1769 | 71.1 | Plus |
