BS20738.complete Sequence
2441 bp assembled on 2011-02-17
GenBank Submission: KX804636
> BS20738.complete
GAAGTTATCAGTCGACATGGTGCATCTGTATCAACGACGTCGCAACCGCG
AACAGGCTGTGAAACAATTCATTGATCTCTGCAACAATCTAGGTGCTAAC
TGCAGCACGACGACAGCCACATCCCCGTCAACTTCCTCCTCCTCAGCCAG
CAGCACGCAGAACTTAATAGCAGTAGTGCCGCCACAGTTGCAGCAGCTGC
AGGTGCAATTACCGGCGCCAGGTGGAGGAGGAGGAGCAGGTGCAGGAGGA
GGAGGTGGTGGAGGTGGGGGAGCTGCGCCTGTGAGGCGCCACATCTCGCA
TACAACAGCCGTGAAGTTTTTGTACGCCCGTAAATTTGATATACCACGAG
CAGTCTCACTGTACGAACAGCATGAACAGATCCGCCTGAAGGAGTATCTA
TATAACATCGATCCGGATGTGGAGCCCTTGCGCTCCGAGTTGCAGACCGG
CAAGTTCACAATCCTGCCCGCACGCACTTCCAGTGGCGCTGCCATCGCCC
TTTTCACCGCCAATCGACACAGTCCGCTGAGCGTTTCGCACACAACCACG
CTGCAGGGCATCGTCTATCAGCTGGACAGTGCGCTCCAGGATTCGGAGAC
GCAGCGTGCCGGGCTCGTTTTTATCTACGACATGAGCGGCTCCAAGTATT
CCAACTTCGACTACGACCTCTCCCAGAAGATTCTCACACTGCTTAAGGGC
GGCTATCCAGCGCGTCTGAAGAAGGTCCTGATCGTGACGGCGCCACTGTG
GTTCAAGGCACCCTTCAAGATCCTGCGTCTGTTCGTGCGCGAGAAGCTGC
GCGAGCGAGTGTTCACTGTATCGGTGCCTCAATTGGCGCTGCACGTGCCG
CGCAAGGCGCTGCCCATTCACTTGGGTGGCACGCTGGAGGTCGATCACGC
CACATGGTTGCTCAGCTGCCGCCAATCGATGACGAATCGTGAGGACGAGC
TGCTGGCCAATATCGTGGGTGTGGGCGGTGGATCCGGATCCGGTTCAGCA
GCTGGATCAGCAGCAATTGTGTCCACCAATGGCACGGAAACCGAGGCCGC
GACAACGGCAGCCACGATAATCAGCGCCGTCCACCAGTTGGGCGATAATA
ATACCACCGTGGTGACGGTCAGCAATGGCGTCGGTCCAGCTGGATCGGCA
TCTGGCGGAGCAACGACAGCAGCGTCGGCGGCGACGGAACCCAACGAAAA
TATCACAATCAACGGACTGAGTCCAAGCCACCGTCAGGCGGCGAATAACA
GCAGTAGCAGTAGCAGCAGTGCAGCCACAGTGGCCAATCCCCTCAAGCTC
AACACAAGTGGCTCCGCGGACAACAATAGTACCATCACGAACGCCACCAC
AGCTGCTGGAGCAGCCGGAGCAGCTGCTGGCACCACCACCAATGGCGGCG
GCGAGTTCTGGTCAGAGAATCCACCCAGCAGCGCCTCATCCGGCTTCAGT
GACGATGATAGTCTCGCCGGTCAAGAGGGCGATCCCAAGCCCATTGATCA
GATTGTTCAGATGGTTAAGCAGCGCGGACGCCATGGTCTGATTAAGGAGT
ACGCGGACATTCGGAATAGGGCGCCCGAGGGCACCTTTCTGCATGCGAGA
ATGCGGGCCAATCTGACCAAGAATCGCTACACAGACGTCCTCTGCTACGA
TCACAGTCGAGTTGTTCTGGCACACGAAGACGGCGACGAGCCGTCGGATT
ATATTAATGCGAATTTCGTCGATGGCTACAAACAAAAGAATGCCTATATT
TCAACTCAAGGTCCATTACCAAAGACATCCCAGGACTTTTGGCGCATGAT
CTGGGAACAACATTGTTTAGTTATAGTGATGACGACGCGCGTGATGGAGC
GCGGACGCGTGAAATGCGGCCAGTACTGGGAGCCGACTGAAGAAAGTTCC
TTAGAGTTTGGCGACTACCATGTGCGAACAATTAGCGTTGAGTGCAACGA
GGACTATATGGTTGCCTCGTTAGAATTGAGAAACATAAAGACTGACGAAA
TTCGCAATGTCTCACATTGGCAGTTCACCAGCTGGCCGGACTATGGCGTT
CCCAGCTCGGCCATGGCCATGCTGAACTTCCTGCAGAAGGTGCGTGAGAA
GCAGGCGCAGCTTGTCCAAGGACTGGGCGACACCTGGGCGGGTCATCCCC
GTGGACCGCCCATTGTGGTGCACTGCAGTGCAGGCATTGGACGCACAGGT
ACATTCATCACCCTGGACATTTGCATATCGCGCCTGGAGGACGTGGGCAC
GGCGGACATACGTGGAACGGTTGAGAAGATCCGGTCGCAGCGAGCCTACT
CCATTCAGATGCCCGATCAGTACGTGTTCTGTCACCTGGCCCTCATCGAA
TACGCATATTCGCGTGGAATGCTACAGACGGTCGATCTGGCTGGCTTCGA
TGAGCGCGAACCGGACTCGGAGTAGAAGCTTTCTAGACCAT
BS20738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RB | 2409 | CG32697-PB | 1..2409 | 17..2425 | 12030 | 100 | Plus |
| l(1)G0232-RA | 2484 | CG32697-PA | 113..2484 | 54..2425 | 11845 | 100 | Plus |
| l(1)G0232-RG | 2373 | CG32697-PG | 3..2373 | 55..2425 | 11840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RB | 2969 | CG32697-RB | 176..2585 | 16..2425 | 12035 | 100 | Plus |
| l(1)G0232-RA | 3046 | CG32697-RA | 291..2662 | 54..2425 | 11845 | 100 | Plus |
| l(1)G0232-RG | 5668 | CG32697-RG | 487..2857 | 55..2425 | 11840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9630194..9631097 | 1599..696 | 4520 | 100 | Minus |
| X | 23542271 | X | 9643957..9644370 | 466..53 | 2055 | 99.8 | Minus |
| X | 23542271 | X | 9643656..9643888 | 698..466 | 1165 | 100 | Minus |
| X | 23542271 | X | 9629668..9629899 | 1990..1759 | 1160 | 100 | Minus |
| X | 23542271 | X | 9629106..9629336 | 2425..2195 | 1155 | 100 | Minus |
| X | 23542271 | X | 9629394..9629605 | 2200..1989 | 1060 | 100 | Minus |
| X | 23542271 | X | 9629961..9630125 | 1762..1598 | 825 | 100 | Minus |
| X | 23542271 | X | 9645710..9645750 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:23:26 has no hits.
BS20738.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:51 Download gff for
BS20738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RB | 177..2585 | 17..2425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:19 Download gff for
BS20738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RB | 177..2585 | 17..2425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:14 Download gff for
BS20738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RB | 177..2585 | 17..2425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:14 Download gff for
BS20738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9629106..9629332 | 2199..2425 | 100 | <- | Minus |
| X | 9629396..9629603 | 1991..2198 | 100 | <- | Minus |
| X | 9629668..9629897 | 1761..1990 | 100 | <- | Minus |
| X | 9629963..9630123 | 1600..1760 | 100 | <- | Minus |
| X | 9630194..9631095 | 698..1599 | 100 | <- | Minus |
| X | 9643657..9643887 | 467..697 | 100 | <- | Minus |
| X | 9643957..9644367 | 56..466 | 99 | <- | Minus |
| X | 9645711..9645749 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:19 Download gff for
BS20738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9523996..9524156 | 1600..1760 | 100 | <- | Minus |
| arm_X | 9523139..9523365 | 2199..2425 | 100 | <- | Minus |
| arm_X | 9523429..9523636 | 1991..2198 | 100 | <- | Minus |
| arm_X | 9523701..9523930 | 1761..1990 | 100 | <- | Minus |
| arm_X | 9524227..9525128 | 698..1599 | 100 | <- | Minus |
| arm_X | 9537690..9537920 | 467..697 | 100 | <- | Minus |
| arm_X | 9537990..9538400 | 56..466 | 99 | <- | Minus |
| arm_X | 9539744..9539782 | 17..55 | 100 | | Minus |
BS20738.pep Sequence
Translation from 16 to 2424
> BS20738.pep
MVHLYQRRRNREQAVKQFIDLCNNLGANCSTTTATSPSTSSSSASSTQNL
IAVVPPQLQQLQVQLPAPGGGGGAGAGGGGGGGGGAAPVRRHISHTTAVK
FLYARKFDIPRAVSLYEQHEQIRLKEYLYNIDPDVEPLRSELQTGKFTIL
PARTSSGAAIALFTANRHSPLSVSHTTTLQGIVYQLDSALQDSETQRAGL
VFIYDMSGSKYSNFDYDLSQKILTLLKGGYPARLKKVLIVTAPLWFKAPF
KILRLFVREKLRERVFTVSVPQLALHVPRKALPIHLGGTLEVDHATWLLS
CRQSMTNREDELLANIVGVGGGSGSGSAAGSAAIVSTNGTETEAATTAAT
IISAVHQLGDNNTTVVTVSNGVGPAGSASGGATTAASAATEPNENITING
LSPSHRQAANNSSSSSSSAATVANPLKLNTSGSADNNSTITNATTAAGAA
GAAAGTTTNGGGEFWSENPPSSASSGFSDDDSLAGQEGDPKPIDQIVQMV
KQRGRHGLIKEYADIRNRAPEGTFLHARMRANLTKNRYTDVLCYDHSRVV
LAHEDGDEPSDYINANFVDGYKQKNAYISTQGPLPKTSQDFWRMIWEQHC
LVIVMTTRVMERGRVKCGQYWEPTEESSLEFGDYHVRTISVECNEDYMVA
SLELRNIKTDEIRNVSHWQFTSWPDYGVPSSAMAMLNFLQKVREKQAQLV
QGLGDTWAGHPRGPPIVVHCSAGIGRTGTFITLDICISRLEDVGTADIRG
TVEKIRSQRAYSIQMPDQYVFCHLALIEYAYSRGMLQTVDLAGFDEREPD
SE*
BS20738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-PB | 802 | CG32697-PB | 1..802 | 1..802 | 4149 | 100 | Plus |
| l(1)G0232-PC | 797 | CG32697-PC | 6..797 | 11..802 | 4083 | 99.7 | Plus |
| l(1)G0232-PA | 827 | CG32697-PA | 38..827 | 13..802 | 4081 | 99.9 | Plus |
| l(1)G0232-PG | 790 | CG32697-PG | 2..790 | 14..802 | 4080 | 100 | Plus |
| l(1)G0232-PF | 597 | CG32697-PF | 1..597 | 206..802 | 3103 | 100 | Plus |
