BS20742.complete Sequence
3194 bp assembled on 2011-02-17
GenBank Submission: KX805556
> BS20742.complete
GAAGTTATCAGTCGACATGTACAAAAATGCACTGAAAGGCGGTATTCGCA
CGGCCAAGCAGGCTTGGAAGTTAAAAAACGCTGCCAGATATACTCAGAGT
TTCCACTTCCTCGCCAGAAACACCCCGAGAACACCTTTGTTGCTACTAAA
AACGACAGGCGATAACAACAGCTCCCCCCGAATCGTTGCTAACTATTATC
GGACAGCTCCAGTTAACCCCCCGAAGCAGCAGAATCCGAAACCCAGCGGA
GCGGCAGATAAGACCACCTCAGTAAAGCATCTTTTTCGAGCAGAAAGCGG
CCACCTCAACGCGCTAATCTCGTCGAAGCAATTTGTGAAGGTGCAAAAGC
AGTTCTACAGGGACTTCTCTTCCGTTTCGCTTGGAGCCCCTCTGAAGAGC
AGTGACGCTCCGTTGCTGGGAGATTTGTGCAGTCAGTATCGCGCCATCCT
CGCCCACACATCAGCGGACGTGATTCCAGGCCAGGATCGCCATCATCCGG
GTTGCAACTATCAGCAGATCAGGCGGGCACACACACAGTTACTGAGCAAG
GAGCAGCAGCTGGAGCAGGAGCGCAAGATGGCCCAGAAGGCAAAGTTCGA
GAGGCTGCCCACCAATGTGGTGCCAAGGCACTACGAGCTCCTCCTGCAGC
CCAATCTCAAGGAGTTCACCTTCACGGGCAAGACCGTGGTGCAAGTCAAT
GTCAAGGAGCCCACTACCCAGATAACCCTGAATGCCCTGGACATTGTTCT
CGATTCGGTAGAGCTCCATTTTGAGTGCAGCAAACTGAAGCCGGAGAAGA
TAGTGTACTCTGCGGAAAATGAGACGGCCACGCTGGAGTTTGCCCAAGAG
ATTCCGGCGGAGACTCAAGGCGTACTGCATATGTCCTTTACGGGCGAGTT
GAACGACAAGATGAAGGGCTTCTACAGGAGCAAGTACTTCGGACCGAACG
GCGAAGAGCGCTTTGCGGGCGTCACCCAGTTTGAGGCCACCGATGCCCGA
CGTTGCTTCCCCTGCTGGGACGAGCCCGCCATTAAAGCCACCTTCGACAT
CACACTGGTGGTGCCCAAGGACCGGGTGGCTCTGTCCAACATGCCGGTCA
TCAAGGAGGATTCCCTTCCAGACGGTCTGCGACGAGTGCGTTTCGACCGC
ACGCCCATCATGTCCACCTACCTGGTGGCCGTCGTAGTGGGCGAGTACGA
CTATGTCGAGGGCAAGTCCGACGATGGCGTCCTCGTCAGGGTTTTCACAC
CCGTTGGCAAACGCGAGCAGGGCACTTTCGCCCTGGAGGTGGCCACCAAG
GTGCTGCCGTACTACAAGGACTACTTCAACATCGCGTATCCGTTACCCAA
GATGGACCTCATCGCCATCTCCGACTTCTCGGCCGGCGCCATGGAGAACT
GGGGCCTGGTCACCTACCGTGAGACCTTTGTGCTAGTGGACCCGAAGAAC
ACCTCGCTGATGCGCAAGCAGTCGATTGCGCTGACAGTGGGTCACGAGAT
TGCCCATCAGTGGTTCGGCAATCTGGTAACTATGGAGTGGTGGACCCATC
TTTGGTTGAACGAAGGCTATGCCTCTTTCGTGGAGTTCCTGTGCGTACAC
CACCTGTTCCCGGAGTATGACATCTGGACGCAGTTCGTCACAGACATGTA
CACGCGAGCCCTGGAGCTGGACTCTCTGAAAAACTCGCATCCCATCGAGG
TGCCCGTGGGCCATCCGTCCGAAATCGACGAGATCTTCGATGAAATCAGC
TACAATAAGGGTGCCTCGGTGATTCGCATGCTGCACGACTACATCGGCGA
GGATACCTTCAGAAAGGGCATGAATCTGTATCTAACTCGTCATCAGTACG
GAAACACCTGCACCGAGGACCTGTGGGCTGCTCTGCAAGAAGCCAGCTCC
AAGAACGTGAGCGACGTGATGACCTCGTGGACACAGCACAAGGGCTTCCC
AGTGGTTAGCGTCGAGTCAGAACAAACAAGCAAGAATCAACGCCTGCTGC
GCCTTAAGCAGTGCAAGTTTACGGCTGATGGTTCGCAGGCGGACGAGAAC
TGCCTATGGGTGGTGCCCATTTCGGTGTCTACCTCAAAGAATCCCACAGG
GATCGCCAAGACCTTCCTGCTGGACAAGTCCTCAATGGAGGTGACACTCG
ACAACGTCGATGAGGACGATTGGATCAAAATCAATCCGGGAACAGTGGGT
TACTATCGCACCCGCTATTCGCAAGAAATGCTAGAACAGCTGATGCCCGC
AGTAGAGAAGATGGAGCTGCCGCCTCTAGATCGTCTGGGATTGATCGATG
ACATGTTTGCTATGGTGCAGGCGGGTCACGCAAGTACTGCCGATGTTCTG
GCCCTGGTTGATTCGTACAGAAACGAGACGAACTACACGGTGTGGACTGC
CATCACCAACTCGCTCACCAATCTGCACATTCTTATCTCGCACACCGATC
TTATGGAGGACTTCCATCGCTTCGGACGGAATCTGTACGAGCCGGTGGCC
TATCGCCTGGGCTGGGAGCCACGCGATGGGGAGAATCACCTGGACACTTT
GCTCAGGAGCTTGGTGCTCACACGACTGGTCTCCTTCCGCAGCAGCGATA
CCATCGAAGAGGCAAAAATCCGCTTCCGCAGACACGTGAACGGCACAGAA
CTGCTACCGGCGGATCTGCGCACCACTTGCTACAAGGCCGTACTGCAAGA
TGGCGACGAAAAGATCTTCAATGAGATGCTTGATCTGTACAGGGCCACCG
ATTTGCACGAGGAGCAGGACCGCATCTCGCGAGCTCTCGGTTGTTGCGGA
GATTTAAAGCTGTTGCGTCGTGTCATCGACTTTGCCATGTCGAGTGAAGT
GAGAGCTCAGGACTCTGTGTTTGTAATTGTCGCCGTGGCCATCAACCCCA
AGGGACGTGACATGGCTTGGGAGTTCTTTAAGGAGAACAACAAACAGCTG
CTGGAACGCTACCAGGGTGGCTTTCTACTTTCCCGTCTAATTAAGTATCT
GATCGAGAACTTCGCGTCTGAGGAGCGCGCCAAAGAAGTGGAAGAGTTCT
TGCAGGTCAATCAAATCCCCGGCTGCGAGCGTACTGTATCCCAGGCGGTG
GAGACCATCCGACTCAACGCGGCCTGGCTGCAGCGTGACCGCGAGCAGTT
GGCGATCTTCCTCAGGGATGACCAATAAAAGCTTTCTAGACCAT
BS20742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-RE | 3162 | CG1009-PE | 1..3162 | 17..3178 | 15795 | 100 | Plus |
| Psa-RC | 3228 | CG1009-PC | 130..3228 | 80..3178 | 15480 | 100 | Plus |
| Psa-RI | 2601 | CG1009-PI | 1..2601 | 578..3178 | 12990 | 100 | Plus |
| Psa-RC | 3228 | CG1009-PC | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-RE | 3715 | CG1009-RE | 92..3255 | 16..3179 | 15805 | 100 | Plus |
| Psa-RI | 3665 | CG1009-RI | 105..3205 | 79..3179 | 15490 | 100 | Plus |
| Psa-RA | 3916 | CG1009-RA | 356..3456 | 79..3179 | 15490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1521133..1522458 | 1517..2842 | 6615 | 99.9 | Plus |
| 3L | 28110227 | 3L | 1519947..1520764 | 701..1518 | 4090 | 100 | Plus |
| 3L | 28110227 | 3L | 1518176..1518798 | 80..702 | 3115 | 100 | Plus |
| 3L | 28110227 | 3L | 1522704..1522920 | 2963..3179 | 1085 | 100 | Plus |
| 3L | 28110227 | 3L | 1522521..1522645 | 2842..2966 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 1517691..1517755 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:00:21 has no hits.
BS20742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:48 Download gff for
BS20742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RE | 107..3266 | 17..3176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:53 Download gff for
BS20742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RE | 93..3252 | 17..3176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:24 Download gff for
BS20742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RE | 93..3252 | 17..3176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:24 Download gff for
BS20742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1517692..1517755 | 17..80 | 100 | -> | Plus |
| 3L | 1518177..1518796 | 81..700 | 100 | -> | Plus |
| 3L | 1519947..1520763 | 701..1517 | 100 | -> | Plus |
| 3L | 1521134..1522458 | 1518..2842 | 99 | -> | Plus |
| 3L | 1522522..1522644 | 2843..2965 | 100 | -> | Plus |
| 3L | 1522707..1522917 | 2966..3176 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:53 Download gff for
BS20742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1517692..1517755 | 17..80 | 100 | -> | Plus |
| arm_3L | 1518177..1518796 | 81..700 | 100 | -> | Plus |
| arm_3L | 1519947..1520763 | 701..1517 | 100 | -> | Plus |
| arm_3L | 1521134..1522458 | 1518..2842 | 99 | -> | Plus |
| arm_3L | 1522522..1522644 | 2843..2965 | 100 | -> | Plus |
| arm_3L | 1522707..1522917 | 2966..3176 | 100 | | Plus |
BS20742.pep Sequence
Translation from 16 to 3177
> BS20742.pep
MYKNALKGGIRTAKQAWKLKNAARYTQSFHFLARNTPRTPLLLLKTTGDN
NSSPRIVANYYRTAPVNPPKQQNPKPSGAADKTTSVKHLFRAESGHLNAL
ISSKQFVKVQKQFYRDFSSVSLGAPLKSSDAPLLGDLCSQYRAILAHTSA
DVIPGQDRHHPGCNYQQIRRAHTQLLSKEQQLEQERKMAQKAKFERLPTN
VVPRHYELLLQPNLKEFTFTGKTVVQVNVKEPTTQITLNALDIVLDSVEL
HFECSKLKPEKIVYSAENETATLEFAQEIPAETQGVLHMSFTGELNDKMK
GFYRSKYFGPNGEERFAGVTQFEATDARRCFPCWDEPAIKATFDITLVVP
KDRVALSNMPVIKEDSLPDGLRRVRFDRTPIMSTYLVAVVVGEYDYVEGK
SDDGVLVRVFTPVGKREQGTFALEVATKVLPYYKDYFNIAYPLPKMDLIA
ISDFSAGAMENWGLVTYRETFVLVDPKNTSLMRKQSIALTVGHEIAHQWF
GNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDMYTRALE
LDSLKNSHPIEVPVGHPSEIDEIFDEISYNKGASVIRMLHDYIGEDTFRK
GMNLYLTRHQYGNTCTEDLWAALQEASSKNVSDVMTSWTQHKGFPVVSVE
SEQTSKNQRLLRLKQCKFTADGSQADENCLWVVPISVSTSKNPTGIAKTF
LLDKSSMEVTLDNVDEDDWIKINPGTVGYYRTRYSQEMLEQLMPAVEKME
LPPLDRLGLIDDMFAMVQAGHASTADVLALVDSYRNETNYTVWTAITNSL
TNLHILISHTDLMEDFHRFGRNLYEPVAYRLGWEPRDGENHLDTLLRSLV
LTRLVSFRSSDTIEEAKIRFRRHVNGTELLPADLRTTCYKAVLQDGDEKI
FNEMLDLYRATDLHEEQDRISRALGCCGDLKLLRRVIDFAMSSEVRAQDS
VFVIVAVAINPKGRDMAWEFFKENNKQLLERYQGGFLLSRLIKYLIENFA
SEERAKEVEEFLQVNQIPGCERTVSQAVETIRLNAAWLQRDREQLAIFLR
DDQ*
BS20742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-PE | 1053 | CG1009-PE | 1..1053 | 1..1053 | 5501 | 100 | Plus |
| Psa-PC | 1075 | CG1009-PC | 1..1075 | 1..1053 | 5468 | 98 | Plus |
| Psa-PI | 866 | CG1009-PI | 1..866 | 188..1053 | 4527 | 100 | Plus |
| Psa-PH | 866 | CG1009-PH | 1..866 | 188..1053 | 4527 | 100 | Plus |
| Psa-PF | 866 | CG1009-PF | 1..866 | 188..1053 | 4527 | 100 | Plus |
