Clone BS20743 Report

Search the DGRC for BS20743

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG34232-RB
Protein status:BS20743.pep: full length peptide match
Sequenced Size:422

Clone Sequence Records

BS20743.complete Sequence

422 bp assembled on 2011-01-18

GenBank Submission: KX803660

> BS20743.complete
GAAGTTATCAGTCGACATGTTTGGCCCGCTGCAGATTATCGTTTTTGCCA
CTATCTTGGTGGCCGTGGCCATGGCCATGCAGCCACTGGAGGACAATGAG
CGAACCCATCATCTGAACCACAAGCGCCAGTTGTCGCAACAGCACCACCA
CCACCACCAAAAGCTCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGA
AACATGGTGGTTCCCACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGA
AAGGCCAGGCAGAGCCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCA
GAAGGAGCACCGCCAGCAGCAGGACAACCACACCCGCAAATCCCGATCGC
ATTCCAAGGGCAGCAAGCAGCATCACAAGCGGCACACGGGATCGCGTCGC
CACTAGAAGCTTTCTAGACCAT

BS20743.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RB 390 CG34232-PB 1..390 17..406 1950 100 Plus
CG34232-RC 384 CG34232-PC 12..384 34..406 1865 100 Plus
CG34232-RA 384 CG34232-PA 12..384 34..406 1865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RB 831 CG34232-RB 229..618 17..406 1950 100 Plus
CG34232-RC 775 CG34232-RC 190..562 34..406 1865 100 Plus
CG34232-RA 702 CG34232-RA 117..489 34..406 1865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12165122..12165511 406..17 1950 100 Minus
Blast to na_te.dros performed 2014-11-26 16:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 696..737 301..342 111 73.8 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8578..8619 301..342 111 73.8 Plus

BS20743.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:09 Download gff for BS20743.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 198..581 23..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:22 Download gff for BS20743.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 215..598 23..406 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:34 Download gff for BS20743.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 235..618 23..406 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:34 Download gff for BS20743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12165122..12165505 23..406 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:22 Download gff for BS20743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8052627..8053010 23..406 100   Minus

BS20743.pep Sequence

Translation from 16 to 405

> BS20743.pep
MFGPLQIIVFATILVAVAMAMQPLEDNERTHHLNHKRQLSQQHHHHHQKL
QEVRHSGHDSLKHGGSHVKEHQAHHSERKARQSHKEPGHKKSHHQKEHRQ
QQDNHTRKSRSHSKGSKQHHKRHTGSRRH*

BS20743.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-PB 129 CG34232-PB 1..129 1..129 711 100 Plus
CG34232-PC 127 CG34232-PC 5..127 7..129 678 100 Plus
CG34232-PA 127 CG34232-PA 5..127 7..129 678 100 Plus