BS20752.complete Sequence
2726 bp assembled on 2011-02-17
GenBank Submission: KX805000
> BS20752.complete
GAAGTTATCAGTCGACATGCCCATTTGCAAAAGTTCACCGGGTACGGCGA
GCAACAAAACAGCCACGGATATATCCGCCGACCACGTGACGGAAGCGGCC
CAGGTGAAGCGGACGCGGGAGCAGGCCTACTTCAACTCCTACGACTTCGA
TGCAATCGAGGTGCTGCCCTACGAGGAGGAGGACGACGAGGCGGGAGGCA
CCAGTCACAGCAGGAGCAGGAGCAGGAGCCAGAGCCGTAGCCAAAGTCGT
TGCGGAAGCAGCAGCAGCCGGAGCAGCAGCACCAGGAGCTACTCCGCAGC
CAAGGAGCCCGTTGCCGGCCACAAGTTTGCCTATCTGCAACGCCTGGGCG
CCTTTTTTGCTCGCAACGGAGGTGGAGCAGGCGAATCGGGATCGGGAGAA
GCTGCTGGTATAGCTGCTCCAAGTGGAGGAGGTGCATCCAACGCGGCGCC
CAAGGGAAGCAGCGAAAATTTTCTACTGCCACGAGCCATGCTTAAATATC
AAAGCACGGCGACAGCATCAGCCTCGCCATCGTCCACATCCACGGCAGCG
GTTGCAATGCCACTGAAGAATGGACTGGCCAATGGAATGGGGAATGCAAT
TGGTCACGACCAACAGCTGGAGGCGACCGGCAGCGCGGGGGAGCGCAGCA
AGAAGTGCTCGATTGCGTCCAATGTCAGCAGCACGCATTCCACGGATTCC
GGACTGCCAGTCGCAGCAGCAGCAGTATCAGCATCAGCATCAGCTTCAGC
GGCAGCATCTGCGACTGCAGCAACATCTGCTGCAGCAGCGGCAGCAGCAG
CACAGGCGGCGCGTGGCGGAGGAGGTGATGGTGGCGGCTCACACTATTCG
ACGGACAAAAGCGGCTCGTCCGGTTATTACAGCTCCAATGTGTGCTCCAC
TTACTCGCTGGACGAGCACATCTATTGCGAACCAGTCATCGATGTCCAGG
AGAAGATCAAGAGTGTGGCCGCCAGACAGCGGCAAAGACCACCGCTCCAG
CTACCAACGAAAGTGGGCGCTCCGCAGGAGGCGCCATCGATAGACCCACC
GGAAGGCTCATCGGAAAAGTTGTCCGCAGTGAAGAGTCAGCGCTCGGACA
TGCAAGATGCAGCCGGAGCTGCCGCATCGAATAGCCATCAAACGCAGTCG
AAGGCCGAGGCGGCCGAGGGGCTGCATCACTACAGCAAAAAGCTGCGAGT
TCTGGAGACGAGCATCGAGAATCTGGACCGCCACCTGAAGACTTTTCCCA
GTCTGTATGCCCAAGAGCATATTGTGAGCTTCATGCAAGTGGCCGGCGCA
AGAAACGAAGGCCCACCCCAGGCTCTGGATATTGGAGAGAAGCTAAGGGT
CTACAACCAGTTGCCCACCATCATGGAGCAGCAGCAGCAGCAGCAACAGG
AGCAGATGGTGGATGATTCATTGCTGGATATTGACCTAGATGCCTTTCTT
TTGGCGCCCAACGCGGGGCATCGTGGCATCGACAATCCCAGCTTTCTGAA
CGACGAGCAGCTGGCGGAGAACAACTACAAGTGCGCCAAGTACATCAACT
CCTGTCCCGAAGATGCCTACCGCCTGGAGAGCGAAAGGGGCGGAGCGGGA
GGACCTGGTGTGGGCGTGGCAGAGGAGACATATGTCAAGCGGTATGAGGA
TCAGTTGCACTTCCAGAACACGCGGGAGCTGTTGGAGGACGTCCGTGATA
AGATCCGCCTCCTATCGCGTGCCACACCCCCGACTTCGGGCACGCCCACA
CCCGCCAGCACCCCGCCCTCCGATGTGCCCAAGGAACTGGAAGGGATGAT
CCACACGCTGAAGCACGAACTAGAGTCGTACCTGCAGCGCATGAACCAGC
ACAGTGAGCTGGAACTCCGGCAGTTGTGCAGCGGCTTGGGACGCCAGCAG
CACGTGGTCCGCATGCAAAACGCCCTGGAACGCAGACGCAGTTGCGCCGA
TCTTCAACTGAATGCCTACGAGGCAGTACGGGATGGAGTACTCATCTCCG
CCAATGGCCGACCTCTCAGCGTTCGCGAGCAGATCATGACCATTCGTTGT
GCCAGCGATCCCAACTTCAAGATGAAGCGCAAGTCCATAGCGGAGATCTT
TCCCGCCGCCGAATGCTATGTGGAATCGGAGGTCACCACCACCAGTCTCT
CGCGCAGTGCCACGCCCTCGCCCGCCTCAACGCCGCAGTTGGAGCTCGAG
GCATTGCATCCAGGCCTAGCTACGACCACAATAGTTACGCAAATGCAGCG
CAACCTCACCTTCCACAAGCCCATTCTCGCGGTGTCCAACAGCAATCCTG
GAGGTGGAAATGTGACGGTGGACGGAGCTGGCGGCAATAAGGCCGAGCGG
GATCGGGAGCGGGAAAGCCTCGCCGAGTGGCACCGCAAGAAGCCCAGCAT
CTGGGAGATGTACTACGGCACCAATCGGCTCCATCAGTCGCTCCTCGGGA
AGCAGCGAGGTGGAGGCGAACTGGTCATCAGCAGTGCCCAGCCCACTCTG
TCCTATCCATCCTCGCGACCCGAATCGGACTTCACGCTCGACCTGCCGCG
GGCGGAACAGCTGCGTCTGAAAATGGAGAAGGAGAAGAAGTTCCGCCAAA
GATGTCGCTTCATCACCACGTTCCTCAGCCTGGTCTTTTTCCTGCTGACT
GTGATGGTGGTCAGCCTGGTTCTGACGCGCGGCAAACGGATGTTTGGCAG
CATGATTTGAAAGCTTTCTAGACCAT
BS20752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30377-RB | 2694 | CG30377-PB | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| CG30377-RA | 2694 | CG30377-PA | 1..2694 | 17..2710 | 13470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30377-RB | 4078 | CG30377-RB | 912..3606 | 16..2710 | 13475 | 100 | Plus |
| CG30377-RA | 3414 | CG30377-RA | 248..2942 | 16..2710 | 13475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7905441..7907444 | 503..2506 | 10020 | 100 | Plus |
| 2R | 25286936 | 2R | 7900952..7901440 | 16..504 | 2445 | 100 | Plus |
| 2R | 25286936 | 2R | 7914357..7914560 | 2507..2710 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:50:08 has no hits.
BS20752.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:31 Download gff for
BS20752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 199..2891 | 17..2709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:52 Download gff for
BS20752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 249..2941 | 17..2709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:39 Download gff for
BS20752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 249..2941 | 17..2709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:39 Download gff for
BS20752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7900953..7901440 | 17..504 | 100 | -> | Plus |
| 2R | 7905443..7907444 | 505..2506 | 100 | -> | Plus |
| 2R | 7914357..7914559 | 2507..2709 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:52 Download gff for
BS20752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3788458..3788945 | 17..504 | 100 | -> | Plus |
| arm_2R | 3792948..3794949 | 505..2506 | 100 | -> | Plus |
| arm_2R | 3801862..3802064 | 2507..2709 | 100 | | Plus |
BS20752.pep Sequence
Translation from 16 to 2709
> BS20752.pep
MPICKSSPGTASNKTATDISADHVTEAAQVKRTREQAYFNSYDFDAIEVL
PYEEEDDEAGGTSHSRSRSRSQSRSQSRCGSSSSRSSSTRSYSAAKEPVA
GHKFAYLQRLGAFFARNGGGAGESGSGEAAGIAAPSGGGASNAAPKGSSE
NFLLPRAMLKYQSTATASASPSSTSTAAVAMPLKNGLANGMGNAIGHDQQ
LEATGSAGERSKKCSIASNVSSTHSTDSGLPVAAAAVSASASASAAASAT
AATSAAAAAAAAQAARGGGGDGGGSHYSTDKSGSSGYYSSNVCSTYSLDE
HIYCEPVIDVQEKIKSVAARQRQRPPLQLPTKVGAPQEAPSIDPPEGSSE
KLSAVKSQRSDMQDAAGAAASNSHQTQSKAEAAEGLHHYSKKLRVLETSI
ENLDRHLKTFPSLYAQEHIVSFMQVAGARNEGPPQALDIGEKLRVYNQLP
TIMEQQQQQQQEQMVDDSLLDIDLDAFLLAPNAGHRGIDNPSFLNDEQLA
ENNYKCAKYINSCPEDAYRLESERGGAGGPGVGVAEETYVKRYEDQLHFQ
NTRELLEDVRDKIRLLSRATPPTSGTPTPASTPPSDVPKELEGMIHTLKH
ELESYLQRMNQHSELELRQLCSGLGRQQHVVRMQNALERRRSCADLQLNA
YEAVRDGVLISANGRPLSVREQIMTIRCASDPNFKMKRKSIAEIFPAAEC
YVESEVTTTSLSRSATPSPASTPQLELEALHPGLATTTIVTQMQRNLTFH
KPILAVSNSNPGGGNVTVDGAGGNKAERDRERESLAEWHRKKPSIWEMYY
GTNRLHQSLLGKQRGGGELVISSAQPTLSYPSSRPESDFTLDLPRAEQLR
LKMEKEKKFRQRCRFITTFLSLVFFLLTVMVVSLVLTRGKRMFGSMI*
BS20752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30377-PB | 897 | CG30377-PB | 1..897 | 1..897 | 4559 | 100 | Plus |
| CG30377-PA | 897 | CG30377-PA | 1..897 | 1..897 | 4559 | 100 | Plus |
| sbb-PE | 929 | CG5580-PE | 103..406 | 11..290 | 168 | 26 | Plus |
| sbb-PC | 929 | CG5580-PC | 103..406 | 11..290 | 168 | 26 | Plus |
| sbb-PF | 939 | CG5580-PF | 113..416 | 11..290 | 168 | 26 | Plus |
