Clone BS20770 Report

Search the DGRC for BS20770

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG13877-RC
Protein status:BS20770.pep: full length peptide match
Sequenced Size:356

Clone Sequence Records

BS20770.complete Sequence

356 bp assembled on 2011-01-18

GenBank Submission: KX806309

> BS20770.complete
GAAGTTATCAGTCGACATGGTTTACATATGCACTCTTGTGGTGTTGATCT
TTCCCGTCTTGTTGTTGGGTGCACCATGGGAAGGGTCGCATCCTAAGTCT
CAGGTGGAATACATCAGCAACGACAAGAGAGTTGATTCTGGCTTCGCCAA
CCCCAATATCGTGCCCATCACCCAGCCGTCGGTCGTAACGCAAACAGCTC
CTCCTCCGCCGCCAAATTCCAAAAACTTTGCATATAGTCCGATGACGCAG
AGCTGGACCCTCATTGCGCCAGGCGATCCGCTGCCCAATAATGACACCCT
CGTCTGGAACCAGAGCAATGACAAATGGCTCACTCGCTAAAAGCTTTCTA
GACCAT

BS20770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13877-RC 324 CG13877-PC 1..324 17..340 1620 100 Plus
CG13877-RB 327 CG13877-PB 1..327 17..340 1555 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13877-RC 416 CG13877-RC 20..343 17..340 1620 100 Plus
CG13877-RB 507 CG13877-RB 113..439 17..340 1555 99.1 Plus
pyx-RB 2502 CG17142-RB 1944..2251 340..33 1540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 218283..218590 33..340 1540 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:12:51 has no hits.

BS20770.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:14 Download gff for BS20770.complete
Subject Subject Range Query Range Percent Splice Strand
CG13877-RC 114..435 17..338 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:36 Download gff for BS20770.complete
Subject Subject Range Query Range Percent Splice Strand
CG13877-RC 20..341 17..338 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:48 Download gff for BS20770.complete
Subject Subject Range Query Range Percent Splice Strand
CG13877-RC 20..341 17..338 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:48 Download gff for BS20770.complete
Subject Subject Range Query Range Percent Splice Strand
3L 218180..218195 17..32 100 -> Plus
3L 218283..218588 33..338 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:36 Download gff for BS20770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 218180..218195 17..32 100 -> Plus
arm_3L 218283..218588 33..338 100   Plus

BS20770.pep Sequence

Translation from 16 to 339

> BS20770.pep
MVYICTLVVLIFPVLLLGAPWEGSHPKSQVEYISNDKRVDSGFANPNIVP
ITQPSVVTQTAPPPPPNSKNFAYSPMTQSWTLIAPGDPLPNNDTLVWNQS
NDKWLTR*

BS20770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13877-PC 107 CG13877-PC 1..107 1..107 584 100 Plus
CG13877-PB 108 CG13877-PB 1..108 1..107 572 99.1 Plus