BS20772.complete Sequence
497 bp assembled on 2011-01-18
GenBank Submission: KX800210
> BS20772.complete
GAAGTTATCAGTCGACATGGGTAACAAACTGAGCTGCTCCTGTGCCCCGC
TGATGCGCAAGGCCTATCGCTATGAGGATTCGCCCTGGCAAAGTTCCCGT
CGTCGCGATGGCCATCTATTGAGTTCGTTCAGGTTGTGGGCAGAGGTCTT
CCATGTATCAGCGAGCGGAGCCGGCACCGTCAAATGGCAACAAGTGTCCG
AGGATTTGGTTCCTGTTAACATCACCTGCATTCAGGACTCGCCCGAGTGC
ATCTTTCACATCACCGCGTACAACAGTCAGGTGGACAAGATACTCGACGT
GAGACTTGTGCAGCCAGGCACACGCATTGGCCAGGCATCGGAGTGTTTCG
TTTACTGGAAGGATCCCATGACCAACGACACCTGGGGCCTCAACTTCACC
TCGCCCATCGATGCCAAGCAATTCCGCGAGTGCTGTGTAAGTATTCTCTT
ACGGTCTGGCAAAGCAAACATTTTCGCATAGAAGCTTTCTAGACCAT
BS20772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RM | 6276 | CG34418-PM | 1..421 | 17..437 | 2105 | 100 | Plus |
| sif-RQ | 8031 | CG34418-PQ | 1..420 | 17..436 | 2100 | 100 | Plus |
| sif-RN | 6246 | CG34418-PN | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RM | 10408 | CG34418-RM | 1086..1507 | 16..437 | 2110 | 100 | Plus |
| sif-RQ | 13469 | CG34418-RQ | 1086..1506 | 16..436 | 2105 | 100 | Plus |
| sif-RP | 14451 | CG34418-RP | 1086..1506 | 16..436 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5668689..5668885 | 122..318 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 5668962..5669127 | 316..481 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 5668034..5668141 | 16..123 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:13:00 has no hits.
BS20772.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:15 Download gff for
BS20772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RH | 153..617 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:40 Download gff for
BS20772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RM | 1087..1507 | 17..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:52 Download gff for
BS20772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RM | 1087..1507 | 17..437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:52 Download gff for
BS20772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5668691..5668884 | 124..317 | 100 | -> | Plus |
| 3L | 5668964..5669127 | 318..481 | 100 | | Plus |
| 3L | 5668035..5668141 | 17..123 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:40 Download gff for
BS20772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5661791..5661984 | 124..317 | 100 | -> | Plus |
| arm_3L | 5661135..5661241 | 17..123 | 100 | -> | Plus |
| arm_3L | 5662064..5662227 | 318..481 | 100 | | Plus |
BS20772.pep Sequence
Translation from 16 to 480
> BS20772.pep
MGNKLSCSCAPLMRKAYRYEDSPWQSSRRRDGHLLSSFRLWAEVFHVSAS
GAGTVKWQQVSEDLVPVNITCIQDSPECIFHITAYNSQVDKILDVRLVQP
GTRIGQASECFVYWKDPMTNDTWGLNFTSPIDAKQFRECCVSILLRSGKA
NIFA*
BS20772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-PM | 2091 | CG34418-PM | 1..142 | 1..142 | 772 | 99.3 | Plus |
| sif-PI | 2072 | CG34418-PI | 1..151 | 1..151 | 770 | 94.7 | Plus |
| sif-PB | 2072 | CG34418-PB | 1..151 | 1..151 | 770 | 94.7 | Plus |
| sif-PN | 2081 | CG34418-PN | 1..151 | 1..151 | 770 | 94.7 | Plus |
| sif-PF | 2657 | CG34418-PF | 1..151 | 1..151 | 770 | 94.7 | Plus |
