Clone BS20775 Report

Search the DGRC for BS20775

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG9410-RA
Protein status:BS20775.pep: gold
Sequenced Size:656

Clone Sequence Records

BS20775.complete Sequence

656 bp assembled on 2011-01-18

GenBank Submission: KX805981

> BS20775.complete
GAAGTTATCAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACG
TCAGAATCCTATGGCCCCTTATTGAAACAAGTGGAGGACACCAGCGCAGC
TTCTCCAGCAGCACCCACCGGTCCTACATAACATTCAATGATTTCCGCAA
AAAACACCGCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCATGCAGG
ACATGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCG
TATGTGAAGCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTCAAGGC
GGACCTCATTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTCGCAGG
TGACCCTGGTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATGGACGT
CTGTTCAACTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTCAAGGA
CATACCTAACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTTCAAGT
CCCTCCTGCACAGCAACGTCGCCAACATATTTTTTGACCTTATCTGCGAT
CAAATGGAAAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGTCCGCC
CTCAATCCGCTCCCACGTGCTTACTTCGGATCGGTCCTGAAAGCTTTCTA
GACCAT

BS20775.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RA 624 CG9410-PA 1..624 17..640 3120 100 Plus
CG9410-RB 729 CG9410-PB 169..729 80..640 2805 100 Plus
CG9410-RE 123 CG9410-PE 1..123 17..131 460 93.5 Plus
CG9410-RB 729 CG9410-PB 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RA 891 CG9410-RA 137..760 17..640 3120 100 Plus
CG9410-RE 833 CG9410-RE 71..702 17..640 3005 98.7 Plus
CG9410-RB 930 CG9410-RB 239..799 80..640 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6669491..6669945 186..640 2275 100 Plus
2R 25286936 2R 6669328..6669434 80..186 535 100 Plus
2R 25286936 2R 6669160..6669224 17..81 325 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:13:40 has no hits.

BS20775.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:20 Download gff for BS20775.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 583..647 17..81 100 -> Plus
CG9410-RD 753..1310 82..639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:59 Download gff for BS20775.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RA 137..759 17..639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:10 Download gff for BS20775.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RA 137..759 17..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:10 Download gff for BS20775.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6669160..6669224 17..81 100 -> Plus
2R 6669330..6669434 82..186 100 -> Plus
2R 6669492..6669944 187..639 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:59 Download gff for BS20775.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2556665..2556729 17..81 100 -> Plus
arm_2R 2556835..2556939 82..186 100 -> Plus
arm_2R 2556997..2557449 187..639 100   Plus

BS20775.pep Sequence

Translation from 16 to 639

> BS20775.pep
MLKGSTLKALDVRILWPLIETSGGHQRSFSSSTHRSYITFNDFRKKHRWY
TKKELVGYSMQDMYSVVSDVSNYHKFVPYVKRSDVHSRGSEGFKADLIVG
FPPLNEAYTSQVTLVPPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSC
VLDFKVSFEFKSLLHSNVANIFFDLICDQMENAFIQEVRRRSGPPSIRSH
VLTSDRS*

BS20775.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-PA 207 CG9410-PA 1..207 1..207 1093 100 Plus
CG9410-PB 242 CG9410-PB 1..242 1..207 1047 85.5 Plus