Clone BS20776 Report

Search the DGRC for BS20776

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:207
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG6902-RA
Protein status:BS20776.pep: full length peptide match
Sequenced Size:335

Clone Sequence Records

BS20776.complete Sequence

335 bp assembled on 2011-01-18

GenBank Submission: KX804368

> BS20776.complete
GAAGTTATCAGTCGACATGACGAATTATGAGAACATTATAAATTTGCCAT
TAAACTTTAATGCAAATAATCACGCCGCTGGTAATAATGAGAACAATGCC
AAAATTGCCATCGTTGGCGAGCAGCTGCTGAATAAGATGTCGCAGCGGGA
TTTCTCCGAAAGCGGCGCTCCCTACCGCCGAAGAACTTCTTCGTTGGCCA
TTTGGAGGGCATGTTCCTGCTCTCTGTGCGTGTTATTTGACTTTGACCAT
TGGCAGCAGAAACGCCATATCATGTCTGCGAGATCTACTCGGCTAGCACC
GCCAACGCTCGGAAGATGAAAGCTTTCTAGACCAT

BS20776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG43163-RC 7572 CG43163-PC 1..145 17..161 725 100 Plus
CG43163-RD 7572 CG43163-PD 1..145 17..161 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG43163-RC 7878 CG43163-RC 107..251 17..161 725 100 Plus
CG43163-RD 7970 CG43163-RD 199..343 17..161 725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8491304..8491463 320..161 800 100 Minus
3L 28110227 3L 8494119..8494262 160..17 720 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:13:45 has no hits.

BS20776.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:21 Download gff for BS20776.complete
Subject Subject Range Query Range Percent Splice Strand
CG6902-RA 50..351 17..318 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:02 Download gff for BS20776.complete
Subject Subject Range Query Range Percent Splice Strand
CG43163-RD 199..343 17..161 100 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:12 Download gff for BS20776.complete
Subject Subject Range Query Range Percent Splice Strand
CG43163-RD 199..343 17..161 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:12 Download gff for BS20776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8491306..8491463 161..318 100 <- Minus
3L 8494119..8494262 17..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:02 Download gff for BS20776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8484406..8484563 161..318 100 <- Minus
arm_3L 8487219..8487362 17..160 100   Minus

BS20776.pep Sequence

Translation from 16 to 318

> BS20776.pep
MTNYENIINLPLNFNANNHAAGNNENNAKIAIVGEQLLNKMSQRDFSESG
APYRRRTSSLAIWRACSCSLCVLFDFDHWQQKRHIMSARSTRLAPPTLGR
*

BS20776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG43163-PC 2523 CG43163-PC 1..49 1..49 249 98 Plus
CG43163-PD 2523 CG43163-PD 1..49 1..49 249 98 Plus