BS20777.complete Sequence
4616 bp assembled on 2011-06-15
GenBank Submission: KX801640
> BS20777.complete
GAAGTTATCAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCG
GCCTGCTGCTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCT
GGATGCACCTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTC
CGCCGTGCCGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCA
ATCACATCGAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTG
ACTACGCTTTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGC
TCTCAATGGACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGC
TAAGCCGCTTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCG
ATTTTCCTGGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGA
CAACTTGCCGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCC
AACTGCCTGTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGA
CTGGACGGCAACGCCATCGATTGCAATTGTGGCGTCTACTCGCTCTGGCG
TCGCTGGCACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCT
GTGCCGCTCCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAG
CATCACTTCAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGC
CCAAGTCGCTGCCGGGGAGCAGGTGGAGCTGAGCTGCGAGGTCACCGGCC
TGCCCCGCCCCCAGATCACGTGGATGCACAACACGCAGGAGTTGGGCTTG
GAGGAGCAGGCACAGGCGGAGATCCTGCCCAGCGGCAGTCTGCTCATCCG
CAGCGCGGACACCAGCGACATGGGCATCTACCAGTGCATCGCTCGCAACG
AGATGGGCGCACTGCGTTCCCAACCCGTTCGCCTGGTAGTTAATGGCGGT
AACCACCCACTCGATTCGCCCATCGACGCCCGCAGCAATCAGGTGTGGGC
GGATGCCGGAACACCCATGCACGGAGCAACGCCACTGCCATCGCCATTGC
CATCGCCACCGCACTTTACCCACCAGCCGCACGACCAAATTGTGGCCCTT
CACGGCTCTGGACACGTGCTGCTCGATTGCGCCGCCTCCGGCTGGCCACA
GCCGGACATACAATGGTTCGTCAATGGCCGCCAACTCTTGCAGTCTACAC
CCAGCCTCCAACTGCAGGCCAATGGCAGCCTCATCCTGCTGCAGCCCAAC
CAGCTCTCTGCCGGCACGTATCGCTGCGAGGCTCGCAATTCTTTGGGCAG
CGTCCAGGCCACCGCCCGCATCGAGCTGAAGGAACTGCCCGAAATTTTAA
CTGCACCGCAAAGCCAAACAATCAAACTGGGCAAGGCCTTTGTGCTGGAG
TGTGATGCCGATGGCAATCCGCTGCCCACCATCGACTGGCAGTTAAATGG
AGTCCCCCTGCCTGGAAATACGCCCGACTTGCAGCTGGAGAACGAGAACA
CCGAACTGGTGGTGGGCGCTGCCCGGCAGGAGCATGCCGGTGTCTATCGC
TGCACGGCGCACAACGAAAACGGGGAGACGAGCGTGGAGGCCACCATCAA
GGTGGAACGGTCGCAGTCGCCACCGCAACTCGCCATCGAGCCGAGCAATT
TGGTGGCCATTACGGGCACCACCATCGAGCTGCCCTGCCAGGCCGATCAG
CCGGAGGACGGACTGCAGATTTCGTGGCGCCACGATGGCCGACTCATTGA
TCCGAATGTGCAGCTGGCGGAGAAATATCAAATAAGCGGCGCCGGCAGTC
TGTTCGTCAAGAATGTGACCATCCCGGATGGCGGACGGTACGAGTGTCAG
CTGAAGAACCAGTTTGGCCGGGCTTCCGCCTCCGCACTGGTAACCATCAG
AAACAACGTGGATTTGGCTCCAGGCGATCGGTATGTGCGCATCGCCTTTG
CCGAGGCAGCCAAGGAGATTGACCTGGCCATCAACAACACCCTGGACATG
CTCTTCTCCAACCGATCCGACAAGGCGCCACCCAATTATGGCGAACTACT
GCGCGTCTTTCGCTTTCCCACTGGCGAAGCTAGGCAGTTGGCCCGTGCGG
CAGAGATCTACGAAAGGACACTGGTCAATATCCGGAAACACGTCCAGGAG
GGCGACAACCTGACCATGAAGAGCGAGGAGTACGAGTTCCGGGATCTGCT
GTCACGAGAGCACTTGCATCTGGTGGCGGAGCTATCGGGCTGCATGGAGC
ACCGTGAGATGCCCAACTGCACGGACATGTGCTTCCACTCGAGGTACAGA
AGCATCGATGGCACCTGCAACAACCTGCAGCATCCCACGTGGGGAGCTTC
ACTCACCGCCTTCCGGAGATTGGCGCCACCGATTTACGAGAATGGATTCA
GCATGCCCGTGGGCTGGACCAAGGGCATGTTGTACTCGGGTCATGCCAAG
CCAAGTGCACGATTGGTGTCCACCTCGCTTGTGGCCACCAAGGAGATCAC
ACCGGATGCCAGGATAACGCACATGGTCATGCAGTGGGGTCAGTTCCTGG
ACCACGATCTGGATCATGCCATTCCATCCGTGAGTTCGGAGAGCTGGGAT
GGCATTGATTGCAAAAAGAGTTGCGAGATGGCTCCACCGTGCTATCCCAT
TGAAGTGCCTCCGAATGATCCTCGTGTCCGGAACCGCCGTTGCATCGATG
TGGTGCGATCCAGCGCCATTTGTGGATCCGGCATGACGTCCCTCTTCTTC
GACAGCGTGCAGCATCGCGAGCAGATCAACCAACTGACCTCCTACATAGA
TGCATCGCAGGTGTATGGCTACAGTACTGCTTTCGCCCAGGAGCTGCGCA
ATCTGACATCGCAGGAGGGACTACTCCGAGTGGGTGTCCACTTCCCGAGG
CAGAAGGACATGCTGCCCTTTGCTGCTCCCCAGGATGGCATGGATTGCCG
CAGGAATCTAGATGAGAACACCATGAGCTGCTTTGTTTCGGGCGACATCC
GTGTGAACGAGCAGGTCGGACTTCTGGCCATGCACACCATTTGGATGAGG
GAGCATAACAGGATAGCCAGCAAACTGAAGCAGATCAATTCCCATTGGGA
TGGTGACACCTTGTACCAGGAGGCTCGCAAGATAGTTGGTGCCCAGATGC
AGCACATCACCTTCAAGCAGTGGTTGCCACTGATTATTGGCGAAAGTGGC
ATGGAGATGATGGGCGAGTACCAGGGCTACAATCCCCAACTGAATCCCAG
CATAGCCAACGAGTTTGCCACGGCTGCCCTGCGATTTGGACACACCATCA
TAAATCCCATTCTCCACCGCTTGAACGAGACCTTCCAGCCGATACCCCAG
GGCCATCTGCTGCTCCACAAAGCCTTCTTTGCTCCCTGGCGTCTGGCCTA
CGAGGGTGGAGTGGATCCCCTGATGAGAGGATTCCTGGCCGTTCCCGCCA
AGCTGAAGACCCCCGATCAGAACCTCAACACTGAGCTCACAGAGAAACTG
TTCCAAACTGCCCATGCTGTAGCATTGGATCTGGCTGCCATCAACATCCA
GAGGGGCAGGGATCACGGAATGCCCGGCTATAATGTCTACAGAAAGCTAT
GCAATCTTACAGTGGCCCAGGACTTTGAGGATCTAGCCGGCGAGATCAGC
AGTGCCGAGATACGCCAGAAGATGAAGGAACTGTATGGACATCCGGATAA
CGTGGATGTTTGGCTGGGCGGGATCCTCGAGGATCAGGTGGAGGGCGGCA
AGGTGGGTCCACTATTCCAGTGCTTGCTGGTTGAACAGTTCCGCAGACTT
CGGGATGGCGATCGCTTGTACTACGAGAATCCCGGTGTCTTCTCACCCGA
ACAACTGACCCAAATCAAGCAAGCCAACTTTGGTCGAGTGCTTTGCGATG
TGGGTGACAACTTCGACCAGGTCACCGAGAACGTGTTCATTTTGGCCAAG
CACCAGGGTGGCTACAAGAAGTGCGAGGATATAATCGGCATTAATCTCTA
TCTGTGGCAGGAGTGCGGCAGGTGCAACAGTCCACCGGCCATCTTTGATT
CCTACATACCGCAAACCTACACCAAGCGGAGCAACAGGCAGAAGAGAGAT
CTCGGCAAGGAGAACGACGAGGTGGCCACCGCCGAAAGCTATGACAGTCC
GCTGGAATCCCTCTACGATGTGAACGAAGAAAGGGTCAGTGGTCTGGAGG
AACTGATTGGTAGCTTCCAGAAGGAGCTGAAAAAGCTGCACAAGAAGCTG
CGCAAGTTGGAGGACTCCTGCAACTCCGCCGACTCCGAGCCGGTGGCTCA
GGTGGTGCAATTGGCGGCGGCACCGCCCCAGCTGGTTTCCAAGCCCAAGA
GGAGCCACTGCGTCGACGACAAGGGCACCACACGGCTGAACAACGAGGTC
TGGTCTCCGGACGTCTGCACCAAGTGCAACTGCTTCCACGGCCAGGTCAA
TTGCCTGAGGGAGCGGTGCGGCGAGGTCAGCTGTCCGCCGGGCGTGGATC
CACTGACGCCTCCGGAGGCCTGCTGCCCACACTGCCCGATGGTCAAGTGA
AAGCTTTCTAGACCAT
BS20777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RE | 4584 | CG12002-PE | 1..4584 | 17..4600 | 22920 | 100 | Plus |
| Pxn-RD | 4584 | CG12002-PD | 1..4584 | 17..4600 | 22920 | 100 | Plus |
| Pxn-RC | 4584 | CG12002-PC | 1..4584 | 17..4600 | 22920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RE | 4820 | CG12002-RE | 57..4646 | 12..4601 | 22935 | 100 | Plus |
| Pxn-RD | 5196 | CG12002-RD | 433..5022 | 12..4601 | 22935 | 100 | Plus |
| Pxn-RC | 5184 | CG12002-RC | 421..5010 | 12..4601 | 22935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2601629..2604283 | 4601..1947 | 13275 | 100 | Minus |
| 3L | 28110227 | 3L | 2610494..2611160 | 1382..716 | 3335 | 100 | Minus |
| 3L | 28110227 | 3L | 2611316..2611557 | 716..475 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 2611788..2612003 | 402..187 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 2608436..2608645 | 1591..1382 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 2607693..2607877 | 1950..1766 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 2608141..2608320 | 1768..1589 | 900 | 100 | Minus |
| 3L | 28110227 | 3L | 2629141..2629315 | 186..12 | 860 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2611638..2611710 | 475..403 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:51 has no hits.
BS20777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-15 16:18:27 Download gff for
BS20777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 446..5028 | 17..4599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:29 Download gff for
BS20777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RC | 434..5016 | 17..4599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:19 Download gff for
BS20777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RC | 426..5008 | 17..4599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:19 Download gff for
BS20777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2601631..2604279 | 1951..4599 | 100 | <- | Minus |
| 3L | 2607693..2607874 | 1769..1950 | 100 | <- | Minus |
| 3L | 2608141..2608319 | 1590..1768 | 100 | <- | Minus |
| 3L | 2608438..2608644 | 1383..1589 | 100 | <- | Minus |
| 3L | 2610494..2611159 | 717..1382 | 100 | <- | Minus |
| 3L | 2611316..2611557 | 475..716 | 100 | <- | Minus |
| 3L | 2611639..2611710 | 403..474 | 100 | <- | Minus |
| 3L | 2611788..2612003 | 187..402 | 100 | <- | Minus |
| 3L | 2629141..2629310 | 17..186 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:29 Download gff for
BS20777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2601631..2604279 | 1951..4599 | 100 | <- | Minus |
| arm_3L | 2607693..2607874 | 1769..1950 | 100 | <- | Minus |
| arm_3L | 2608141..2608319 | 1590..1768 | 100 | <- | Minus |
| arm_3L | 2608438..2608644 | 1383..1589 | 100 | <- | Minus |
| arm_3L | 2610494..2611159 | 717..1382 | 100 | <- | Minus |
| arm_3L | 2611316..2611557 | 475..716 | 100 | <- | Minus |
| arm_3L | 2611639..2611710 | 403..474 | 100 | <- | Minus |
| arm_3L | 2611788..2612003 | 187..402 | 100 | <- | Minus |
| arm_3L | 2629141..2629310 | 17..186 | 100 | | Minus |
BS20777.pep Sequence
Translation from 16 to 4599
> BS20777.pep
MRFMLLMLQLLGLLLLLAGGVQSVYCPAGCTCLERTVRCIRAKLSAVPKL
PQDTQTLDLRFNHIEELPANAFSGLAQLTTLFLNDNELAYLQDGALNGLT
ALRFVYLNNNRLSRLPATIFQRMPRLEAIFLENNDIWQLPAGLFDNLPRL
NRLIMYNNKLTQLPVDGFNRLNNLKRLRLDGNAIDCNCGVYSLWRRWHLD
VQRQLVSISLTCAAPQMLQNQGFSSLGEHHFKCAKPQFLVAPQDAQVAAG
EQVELSCEVTGLPRPQITWMHNTQELGLEEQAQAEILPSGSLLIRSADTS
DMGIYQCIARNEMGALRSQPVRLVVNGGNHPLDSPIDARSNQVWADAGTP
MHGATPLPSPLPSPPHFTHQPHDQIVALHGSGHVLLDCAASGWPQPDIQW
FVNGRQLLQSTPSLQLQANGSLILLQPNQLSAGTYRCEARNSLGSVQATA
RIELKELPEILTAPQSQTIKLGKAFVLECDADGNPLPTIDWQLNGVPLPG
NTPDLQLENENTELVVGAARQEHAGVYRCTAHNENGETSVEATIKVERSQ
SPPQLAIEPSNLVAITGTTIELPCQADQPEDGLQISWRHDGRLIDPNVQL
AEKYQISGAGSLFVKNVTIPDGGRYECQLKNQFGRASASALVTIRNNVDL
APGDRYVRIAFAEAAKEIDLAINNTLDMLFSNRSDKAPPNYGELLRVFRF
PTGEARQLARAAEIYERTLVNIRKHVQEGDNLTMKSEEYEFRDLLSREHL
HLVAELSGCMEHREMPNCTDMCFHSRYRSIDGTCNNLQHPTWGASLTAFR
RLAPPIYENGFSMPVGWTKGMLYSGHAKPSARLVSTSLVATKEITPDARI
THMVMQWGQFLDHDLDHAIPSVSSESWDGIDCKKSCEMAPPCYPIEVPPN
DPRVRNRRCIDVVRSSAICGSGMTSLFFDSVQHREQINQLTSYIDASQVY
GYSTAFAQELRNLTSQEGLLRVGVHFPRQKDMLPFAAPQDGMDCRRNLDE
NTMSCFVSGDIRVNEQVGLLAMHTIWMREHNRIASKLKQINSHWDGDTLY
QEARKIVGAQMQHITFKQWLPLIIGESGMEMMGEYQGYNPQLNPSIANEF
ATAALRFGHTIINPILHRLNETFQPIPQGHLLLHKAFFAPWRLAYEGGVD
PLMRGFLAVPAKLKTPDQNLNTELTEKLFQTAHAVALDLAAINIQRGRDH
GMPGYNVYRKLCNLTVAQDFEDLAGEISSAEIRQKMKELYGHPDNVDVWL
GGILEDQVEGGKVGPLFQCLLVEQFRRLRDGDRLYYENPGVFSPEQLTQI
KQANFGRVLCDVGDNFDQVTENVFILAKHQGGYKKCEDIIGINLYLWQEC
GRCNSPPAIFDSYIPQTYTKRSNRQKRDLGKENDEVATAESYDSPLESLY
DVNEERVSGLEELIGSFQKELKKLHKKLRKLEDSCNSADSEPVAQVVQLA
AAPPQLVSKPKRSHCVDDKGTTRLNNEVWSPDVCTKCNCFHGQVNCLRER
CGEVSCPPGVDPLTPPEACCPHCPMVK*
BS20777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-PE | 1527 | CG12002-PE | 1..1527 | 1..1527 | 8110 | 100 | Plus |
| Pxn-PD | 1527 | CG12002-PD | 1..1527 | 1..1527 | 8110 | 100 | Plus |
| Pxn-PC | 1527 | CG12002-PC | 1..1527 | 1..1527 | 8110 | 100 | Plus |
| Pxn-PA | 1527 | CG12002-PA | 1..1527 | 1..1527 | 8110 | 100 | Plus |
| Pxn-PB | 457 | CG12002-PB | 1..455 | 1..455 | 2390 | 100 | Plus |
